Bioconductor DiffHic

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HiTC gothic diffhic HiC

10.2 years ago Bogdan ▴ 670

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diffhic

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by koustav.pal • 0

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1.3k

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MarginCounts squareCounts DIList DiffHic

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by rulicosentino • 0

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diffhic

updated 10.4 years ago by Aaron Lun ★ 29k • written 10.4 years ago by mrk.carty ▴ 30

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2.2k

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diffHic PreparePairs Hi-c cutGenome

10.5 years ago • updated 10.4 years ago rulicosentino • 0

55 results • Page 2 of 2

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Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k

It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …

Comment: problem reading bam files into nucleR by efoss ▴ 10

I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…

Answer: two questions about limma by Gordon Smyth 53k

Answered here: https://support.bioconductor.org/p/16318/

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0

Thank you very much! will take that into consideration

Comment: Large logFC but somewhat high FDR by JKim • 0

Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.

Votes

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to jared.andrews07 ▴ 30

Popular Question to James W. MacDonald 68k