0
votes
0
replies
17
views
0
votes
0
replies
32
views
0
votes
0
replies
26
views
0
votes
2
replies
102
views
1
vote
1
reply
91
views
updated 3 days ago by
Michael Love
41k
•
written 3 days ago by
marcusn
•
0
0
votes
1
reply
121
views
0
votes
4
replies
233
views
0
votes
0
replies
93
views
2
votes
2
replies
168
views
2
votes
2
replies
382
views
22 days ago • updated 21 days ago
Henry
▴
10
Recent ...
Replies
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part:
```
design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa)
colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2
by
Kim
•
0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga
by
Michael Love
41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first.
Also take a st…
Answer: Too many significant genes when integrating gtex and tcga
by
James W. MacDonald
65k
See `?results`, in particular the lfcThreshold argument.
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
You already ran a temporal assay. Now you can compare each time point to the baseline.
The interaction term is only applicable if you have…
Awards
• All
Popular Question to
Gordon Smyth
50k
Popular Question to
Zainab
•
0
Popular Question to
Theo
▴
10
Popular Question to
gene_bioconductor
▴
10
Popular Question to
rohitsatyam102
▴
20
Locations
• All
EMBL Heidelberg, 2 minutes ago
WEHI, Melbourne, Australia, 6 minutes ago
Canada, 8 minutes ago
France, 12 minutes ago
United States, 31 minutes ago
EMBL Heidelberg, 2 minutes ago
WEHI, Melbourne, Australia, 6 minutes ago
Canada, 8 minutes ago
France, 12 minutes ago
United States, 31 minutes ago
Traffic: 643 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6