Bioconductor Dmr

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DMR Methylation R Gviz

updated 10 months ago by Robert Ivanek ▴ 750 • written 3.4 years ago by ltzhou • 0

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Comment: pathview error "negative length vectors are not allowed by Evan • 0

Same for N-glycan metabolism-- fails with `same.layer = TRUE` , smudges and comet-like shading with `same.layer = FALSE`, crowded web with …

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Technically it's fitting an analysis of deviance (ANODEV) test, but the principle is the same - deviance, like the likelihood, measures goo…

Comment: How to conduct maSigPro analysis with only one condition? by James W. MacDonald 67k

Yeah, it's fine. What `maSigPro` does in this case is to reformulate the data. Your design has columns that are not useful, and `maSigPro` …

Answer: Unable to install any Bioconductor package with new R 4.4.1 - path nor writable by James W. MacDonald 67k

You have installed the packages you wanted: ``` package BiocVersion successfully unpacked and MD5 sums checked package LEA success…

Comment: QSEA- Extraction of Normalized methylation across the samples by celiaruby127 • 0

If you need specific counts for defined regions or windows, you may want to explore other functions or slots within the QSEA object that co…

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