Bioconductor DMR

Showing : DMR • reset

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284

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edgeR DMR

updated 8 months ago by Michael Love 40k • written 8 months ago by Fiona • 0

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783

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DMR Methylation R Gviz

updated 2.4 years ago by Robert Ivanek ▴ 730 • written 2.4 years ago by ltzhou • 0

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859

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dmr MethylationArrayData DMRcatedata

updated 2.9 years ago by James W. MacDonald 63k • written 2.9 years ago by Julie • 0

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537

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Biseq Methylation DMP DMR RRBS

3.2 years ago i.s.castanho • 0

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565

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BiSeq testClusters error dmr

3.2 years ago akhaira • 0

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replies

764

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BiSeq DMR

updated 3.3 years ago by James W. MacDonald 63k • written 3.3 years ago by akhaira • 0

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585

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ChAMP DMR

updated 3.3 years ago by Yuan Tian ▴ 270 • written 3.3 years ago by olive8306 • 0

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689

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bumphunter DMR methylation minfi

3.6 years ago i.s.brorson • 0

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608

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DMR bumphunter EPIC chip

3.6 years ago i.s.brorson • 0

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1.3k

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ChAMP DMR champ.DMR

5.0 years ago yuabrahamliu • 0

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568

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methylsig no replicates dmr

5.2 years ago nilaycan • 0

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1.1k

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bumphunter DMR doparallel multicore

updated 9 weeks ago by Alessandro • 0 • written 5.4 years ago by arce.domingo.1407 • 0

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1.2k

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dmrseq dmr dmrs bisulfite methylation

updated 5.6 years ago by keegan ▴ 60 • written 5.6 years ago by l.kremer • 0

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1.1k

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illumina methylationepic 450k limma minfi dmr analysis dmr

updated 6.5 years ago by Aaron Lun ★ 28k • written 6.5 years ago by Ellen O • 0

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1.3k

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dmrcate dmr analysis dmr

updated 6.6 years ago by Tim Peters ▴ 140 • written 6.6 years ago by alexandria.andrayas ▴ 10

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3.6k

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bumphunter DMR DMR analysis minfi bioconductor

updated 6.7 years ago by rafa ▴ 60 • written 6.7 years ago by chelsey.ju • 0

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3.1k

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bsseq dmr ttest pvalue

updated 7.6 years ago by James W. MacDonald 63k • written 7.6 years ago by enricoferrero ▴ 660

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1.5k

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methylation linear model dmr bsseq biseq

7.8 years ago enricoferrero ▴ 660

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2.3k

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dmr methylation deseq2 bsseq biseq

updated 7.9 years ago by Kasper Daniel Hansen 6.5k • written 7.9 years ago by enricoferrero ▴ 660

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1.2k

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ChAMP minfi DMR dmr analysis lasso

7.9 years ago AST ▴ 60

20 results • Page 1 of 1

Recent ...

Replies

Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

Votes

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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