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dyndoc
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Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH
GO
Biobase
DynDoc
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ctc
ROC
affy
19.7 years ago
Matthew Hannah
▴ 940
0
votes
1
reply
1.7k
views
Rv1.91 or v2.0.0 on MacOS 10.3.5
SAGE
GO
Kidney
hgu95av2
hu6800
rae230a
cdf
Biobase
Ruuid
DynDoc
annotate
edd
multtest
updated 19.6 years ago by
rgentleman
★ 5.5k • written 19.6 years ago by
rkakkar@uchicago.edu
▴ 100
0
votes
0
replies
1.1k
views
marray and limma error with lmFit
Microarray
Biobase
DynDoc
widgetTools
limma
arrayQuality
marray
convert
Microarray
DynDoc
17.1 years ago
Paquet, Agnes
▴ 500
0
votes
0
replies
1.8k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
16.8 years ago
Min Wook Kim
▴ 20
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
Biobase
Ruuid
DynDoc
tkWidgets
affy
graph
Rgraphviz
AnnBuilder
RBGL
PROcess
Biobase
21.1 years ago
madman@jimmy.harvard.edu
▴ 850
0
votes
0
replies
1.3k
views
affy packages on Linux doesn't get installed
DynDoc
tkWidgets
affy
affyPLM
DynDoc
tkWidgets
affy
affyPLM
20.5 years ago
juliab@stat.berkeley.edu
▴ 10
0
votes
0
replies
1.0k
views
Errors w/ getBioC()
aCGH
GO
Biobase
DynDoc
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ctc
ROC
affy
19.7 years ago
Matthew Hannah
▴ 940
0
votes
0
replies
1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH
GO
Biobase
DynDoc
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ctc
ROC
affy
19.6 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH
GO
Biobase
DynDoc
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ctc
ROC
affy
19.6 years ago
rgentleman
★ 5.5k
0
votes
0
replies
1.0k
views
batch vs interactive behavior of reposTools()
Biobase
DynDoc
tkWidgets
widgetTools
Biobase
DynDoc
tkWidgets
widgetTools
19.4 years ago
Marion Hakanson
▴ 50
0
votes
1
reply
918
views
ReadAffy question
GO
Ruuid
DynDoc
annotate
genefilter
multtest
tkWidgets
reposTools
affy
widgetTools
limma
updated 18.4 years ago by
James W. MacDonald
66k • written 18.4 years ago by
Kimpel, Mark W
▴ 890
0
votes
3
replies
1.3k
views
widgetTools wFuns problem
DynDoc
tkWidgets
reposTools
widgetTools
DynDoc
tkWidgets
reposTools
widgetTools
updated 18.3 years ago by
John Zhang
★ 2.9k • written 18.3 years ago by
mattia
▴ 80
0
votes
1
reply
1.1k
views
Problem with limma2biomaRt and MBNI custom CDF
Annotation
GO
cdf
DynDoc
genefilter
tkWidgets
affy
graph
limma
RBGL
biomaRt
Category
updated 17.3 years ago by
James W. MacDonald
66k • written 17.3 years ago by
Scott Ochsner
▴ 300
0
votes
8
replies
3.2k
views
Reading Agilent files using read.maimages
Survival
DynDoc
genefilter
tkWidgets
affy
vsn
marray
convert
ArrayExpress
Survival
affy
updated 16.8 years ago by
Scott Reagan Franklin
▴ 20 • written 16.8 years ago by
Steve Taylor
▴ 100
0
votes
6
replies
3.4k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation
GO
Survival
ExperimentData
cdf
DynDoc
genefilter
geneplotter
multtest
affy
GO
updated 16.8 years ago by
Weiyin Zhou
▴ 220 • written 16.8 years ago by
Jenny Drnevich
★ 2.2k
0
votes
2
replies
1.3k
views
ReadAffy widget fails for Annotated DataFrame
Microarray
DynDoc
tkWidgets
affy
widgetTools
Microarray
DynDoc
tkWidgets
affy
widgetTools
updated 16.7 years ago by
Martin Morgan
25k • written 16.7 years ago by
Kevin R. Coombes
▴ 140
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Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…
Comment: Errors in chromosome annotation-biomaRt
by
blackwidowzzz
• 0
I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …
Answer: Errors in chromosome annotation-biomaRt
by
James W. MacDonald
66k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat
by
James W. MacDonald
66k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons
by
James W. MacDonald
66k
In that case, probably easiest to subset to the groups being compared.
Votes
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
Comment: DESeq2- Mysterious interaction suppresses DEGs
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