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NanoStringNCTools limma ExpressionData RNASeq edgeR

1 minute ago • updated just now mohammedtoufiq91 ▴ 10

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design glm edgeR

updated 5 days ago by Gordon Smyth 50k • written 6 days ago by Guillermo • 0

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DifferentialExpression TimeCourse timeOmics edgeR RNAseq

updated 6 days ago by Gordon Smyth 50k • written 7 days ago by Ashley • 0

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fgsea edgeR

18 days ago • updated 14 days ago gene_bioconductor ▴ 10

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RNASeqData edgeR

updated 18 days ago by Gordon Smyth 50k • written 18 days ago by z_bahari • 0

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edgeR

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limma edgeR RNASeq

updated 11 days ago by Gordon Smyth 50k • written 4 weeks ago by Shaimaa Gamal • 0

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edgeR

4 weeks ago • updated 28 days ago Jonathan ▴ 10

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Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

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how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

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