Bioconductor Edger

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fgsea edgeR

19 days ago • updated 15 days ago gene_bioconductor ▴ 10

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480

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edgeR

4 weeks ago • updated 29 days ago Jonathan ▴ 10

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323

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limma edgeR RNASeq

updated 11 days ago by Gordon Smyth 50k • written 4 weeks ago by Shaimaa Gamal • 0

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267

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DifferentialExpression TimeCourse timeOmics edgeR RNAseq

updated 7 days ago by Gordon Smyth 50k • written 8 days ago by Ashley • 0

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212

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edgeR

written 28 days ago by k___ ▴ 30

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181

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RNASeqData edgeR

updated 19 days ago by Gordon Smyth 50k • written 19 days ago by z_bahari • 0

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157

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design glm edgeR

updated 6 days ago by Gordon Smyth 50k • written 6 days ago by Guillermo • 0

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NanoStringNCTools limma ExpressionData RNASeq edgeR

14 hours ago • updated 41 minutes ago mohammedtoufiq91 ▴ 10

8 results • Page 1 of 1

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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data by mohammedtoufiq91 ▴ 10

https://support.bioconductor.org/u/5106/ thank you very much.

Comment: Ensembl plants at annotationHub? by Daniele • 0

Thank you so much!

Answer: recount3 problem downloading data from source sra by Leonardo Collado Torres ★ 1.0k

Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…

Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10

Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …

Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k

The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…

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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data

Comment: Ensembl plants at annotationHub?

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

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Scholar to Mike Smith ★ 6.5k

Popular Question to mohammedtoufiq91 ▴ 10