Bioconductor EnrichGO

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clusterProfiler enrichGO

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by kavator ▴ 30

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R TAIR clusterProfiler enrichGO Arabidopsis

updated 3.0 years ago by Guido Hooiveld ★ 3.9k • written 3.0 years ago by abby-s • 0

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clusterprofiler enrichGO barplot dotplot

5.8 years ago MAP • 0

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EnrichGO clusterProfiler

written 3.3 years ago by Carolina • 0

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enrichGO

3.0 years ago dailing57 • 0

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enrichGO clusterprofiler

5.8 years ago MAP • 0

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software error enrichGO annotationHub clusterProfiler Job

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by bnajafpour • 0

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clusterProfiler enrichGO

22 months ago Shakiba • 0

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clusterProfiler enrichGO clusterPro

2.5 years ago slimyMS • 0

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1.2k

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clusterProfiler enrichGO

6.6 years ago Francois Marchildon ▴ 20

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clusterProfiler enrichGO

2.5 years ago samsiljee • 0

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ClusterProfiler enrichGO

updated 4.3 years ago by James W. MacDonald 65k • written 4.3 years ago by Reb • 0

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802

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RNASeq simplify clusterProfiler enrichGO simplifyEnrichment

20 months ago estafana.t98 • 0

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715

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clusterProfiler enrichGO

updated 12 weeks ago by Michael Love 42k • written 3 months ago by cinzia.spagnoli • 0

14 results • Page 1 of 1

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Comment: deseq2 results by sajadahmad41454 • 0

thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.

Comment: deseq2 results by swbarnes2 ★ 1.4k

It looks like the PCA plot of a real RNASeq experiment. The red outlier on the left might be the mathematical reason why you have few vali…

Comment: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Dylan.Sheerin • 0

Thank you very much, Gordon. I'll give voomLmFit a go!

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie by Gordon Smyth 50k

Including subjectID in the design matrix always accounts for unbalanced sampling and patient variation but subjects with incomplete records…

Comment: Log-cpm values from limma by Gordon Smyth 50k

No, it does not mean that. `voom()` uses the design matrix with the W covariates, to compute precision weights but not to adjust the log-cp…

Votes

Comment: deseq2 results

Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie

Answer: Extremely small p-values using Limma for proteomic data

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