Showing : annotationHub • reset
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LRBaseDbi error
LRBaseDbi AnnotationHub
12 days ago Francois Marchildon ▴ 20
1
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2
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231
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Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 4 months ago by ★ 3.0k • written 4 months ago by • 0
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1
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190
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News: Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache AnnotationHub ExperimentHub cache
5 months ago shepherl 2.8k
0
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2
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448
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Convert Agilent Probe ID to gene IDs/Symbols
AnnotationHub biomaRt
5 months ago rohitsatyam102 ▴ 20
1
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2
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394
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GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler AnnotationHub GO uniprot
updated 7 months ago by ★ 3.0k • written 7 months ago by • 0
11
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13
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820
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How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
9 months ago • updated 7 months ago rohitsatyam102 ▴ 20
5
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20
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7.6k
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ah <- AnnotationHub() Error in UseMethod("filter_"): no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tb…
AnnotationHub dplyr
10 months ago • updated 8 weeks ago georgia.katsoula ▴ 10
3
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2
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523
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Issue with AnnotationHub
AnnotationHub
9 months ago rahnaman ▴ 10
1
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2
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237
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How to mimic biomaRt results with AnnotationHub?
biomaRt AnnotationHub
10 months ago Ezgi ▴ 30
1
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3
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228
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AnnotationHub: failed to load resource name
AnnotationHub
12 months ago ben.ponv • 0
4
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17
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696
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annotation conversion from old microarray to latest Entrez and Ensembl ID
biomaRt annotation Ensembl annotationHub
updated 12 months ago by 3.4k • written 12 months ago by ▴ 10
4
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2
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326
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News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
EnsDb ensembldb annotation AnnotationHub News
12 months ago Johannes Rainer ★ 1.9k
8
votes
16
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986
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Cannot connect to ExperimentHub server
ExperimentHub AnnotationHub SingleR
updated 13 months ago by 2.8k • written 13 months ago by ▴ 570
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2
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230
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Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 14 months ago by 58k • written 14 months ago by ★ 2.0k
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3
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230
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extracting the genes associated with a specific pathway
pathway KEGG annotation annotationhub
updated 15 months ago by 58k • written 15 months ago by ▴ 620
1
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4
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234
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How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub OrgDb snapshotDate
updated 16 months ago by 2.8k • written 16 months ago by ★ 2.0k
2
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8
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321
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gene enrichment using enrichGO function throuth annotationHub orgDb
software error enrichGO annotationHub clusterProfiler Job
updated 16 months ago by 58k • written 16 months ago by • 0
1
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5
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258
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AnnotationHub; Error: failed to load resource; Timeout was reached: [annotationhub.bioconductor.org]
annotationhub
updated 17 months ago by 2.8k • written 17 months ago by • 0
0
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2
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148
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hg38 tracks for AnnotationHub
annotationhub
18 months ago Michael Love 34k
0
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1
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170
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AnnotationHub display() gives JavaScript Alert and DataTables warning
AnnotationHub Shiny Rstudio
updated 18 months ago by 2.8k • written 18 months ago by • 0
0
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8
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593
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I can't use AnnotationHub()
AnnotationHub
20 months ago 755606975 • 0
1
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3
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842
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AnnotationHub timeout for Ensembl Mouse GTF
AnnotationHub Ensembl Mouse AnnotationHub Ensembl
21 months ago dmgatti ▴ 10
3
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0
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273
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News: EnsDb databases for Ensembl release 98 provide now also transcripts' GC content
annotation ensembldb EnsDb AnnotationHub News
22 months ago Johannes Rainer ★ 1.9k
0
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2
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309
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how to choose annotation file in AnnotationHub web server
annotation AnnotationHub
22 months ago 15958021290 ▴ 10
3
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4
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321
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Are AH52264, AH66175, and AH70594 duplicates?
AnnotationHub
updated 23 months ago by 2.8k • written 23 months ago by ▴ 120
1
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3
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254
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Problem with AnnotationHub after crash during first download of metadata
AnnotationHub
updated 2.0 years ago by 2.8k • written 2.1 years ago by ▴ 10
7
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44
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1.3k
views
OrgDB download failed via AnnotationHub
annotationhub orgdb
updated 2.2 years ago by 2.8k • written 2.3 years ago by • 0
2
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0
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316
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News: ensembl 96 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
updated 2.4 years ago by • 0 • written 2.4 years ago by 2.8k
1
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4
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282
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AnnotationHub Server denied you to change the given directory
annotation annotationhub
updated 2.4 years ago by 2.8k • written 2.4 years ago by ▴ 10
0
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11
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575
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AH134 and other AnnotationHub objects unavailable as "defunct"
AnnotationHub
updated 2.4 years ago by 2.8k • written 2.4 years ago by ▴ 40
1
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1
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341
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The total genes items (e.g. ENTREZ ID, SYMBOL) in OrgDb (Salmo salar; [["AH66207"]]) is just half the gene number in NCBI ?!
Annotationhub Annotationdb profiler annotationdbi
2.4 years ago wecai • 0
3
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9
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2.5k
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AnnotationHub corrupt database
annotationhub
updated 2.5 years ago by 2.8k • written 6.1 years ago by ▴ 180
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0
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358
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News: ensembl 95 gtfs and fasta twobits have been added to AnnotationHub
annotationhub annotationdata ensembl gtf 2bit News
2.6 years ago shepherl 2.8k
5
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10
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989
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 8 months ago by ★ 1.9k • written 2.8 years ago by ★ 3.0k
1
vote
7
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492
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News: ensembl 94 gtfs and fasta twobits have been added to AnnotationHub
annotationdata annotationhub ensembl gtf 2bit News
2.9 years ago shepherl 2.8k
0
votes
5
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493
views
annotationhub: data update
annotationhub
updated 3.1 years ago by 2.8k • written 3.1 years ago by 6.5k
0
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0
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432
views
News: ensembl 93 gtfs and fasta twobits have been added to AnnotationHub
annotationhub ensembl gtf 2bit annotationdata News
3.1 years ago shepherl 2.8k
1
vote
2
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633
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AnnotationHub, force update snapshot date?
annotationhub
updated 3.2 years ago by 2.8k • written 3.2 years ago by ▴ 70
5
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4
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657
views
Eliminating repetitive calls to ExperimentHub
experimenthub annotationhub large dataset
3.3 years ago slinker ▴ 20
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6
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679
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initialization of AnnotationHub() in version 2.12.0 is problematically verbose
AnnotationHub
updated 3.4 years ago by 25k • written 3.4 years ago by ▴ 40
0
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0
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523
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News: ensembl 92 gtfs and fasta twobits have been added to AnnotationHub
ensembl gtf 2bit annotationhub News
3.4 years ago shepherl 2.8k
1
vote
0
replies
805
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News: ensembl 91 gtfs and fasta twobits have been added to AnnotationHub
annotationhub ensembl gtf 2bit News
3.7 years ago shepherl 2.8k
0
votes
1
reply
656
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News: OrgDbs in AnnotationHub
annotationhub orgdb News
3.8 years ago shepherl 2.8k
0
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0
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599
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News: OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb txdb bioconductor annotation annotationhub News
3.9 years ago shepherl 2.8k
0
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2
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547
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Trouble loading Roadmap data from AnnotationHub
annotationhub
updated 3.9 years ago by 2.8k • written 3.9 years ago by • 0
1
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0
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748
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Error: failed to load resource reason: invalid class GRanges object: seqnames(x) contains missing values for newer GRCh38 annotations
AnnotationHub
3.9 years ago marcel.schilling ▴ 10
0
votes
2
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545
views
AnnotationHub downloading dataset fail
annotationhub download_error
updated 4.0 years ago by 58k • written 4.0 years ago by • 0
4
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10
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720
views
Suggestion: spinning wheel for AnnotationHub
annotationhub
updated 4.0 years ago by 2.8k • written 4.1 years ago by 34k
0
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1
reply
691
views
querying annotation hub for common TF, in common cell line returns no results....
annotate annotationhub
updated 4.0 years ago by 2.8k • written 4.0 years ago by ▴ 50
1
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0
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851
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News: ensembl 90 ensembldb EnsDb databases have been added to AnnotationHub
ensemblb ensembl AnnotationHub annotation News
4.1 years ago Johannes Rainer ★ 1.9k
50 results • Page 1 of 1
Recent ...
Replies
Comment: Diffbind dba.plotProfile attempt to select less than one element in OneIndex by bhanratt • 0
``` > DBA 10 Samples, 31953 sites in matrix: ID Tissue Factor Condition Replicate Reads FRiP 1 58 1 H3K4me3 AD …
Answer: Warning messages on Apple M1 BigSur by Vincent J. Carey, Jr. 6.5k
We are not producing M1 binaries at this time. If you use the intel version of R under Rosetta 2 you can use the intel mac binaries.
Comment: Issue::DesignPrimers DECIPHER by slwmartin • 0
Hey, I'm having this issue too. I've tried reinstalling using Conda a few times without luck. Did you reinstall with Conda or from the tar …
Comment: Log fold change interpretation of time series with Wald test by jd348 • 0
So would you recommend still using Log2fold change as a measurement for effect size?
Answer: Error in `*tmp*`$samples : $ operator is invalid for atomic vectors by James W. MacDonald 58k
I believe you want ``` > x <- as.matrix(read.delim("E:/bioinformatic/RNAseq/GSE168008_raw_count.txt", sep ="" ,row.names = 1)) > sampl…
Votes
Comment: Use of coef() as a measure of effect size in a multiple regression using DESeq2
Answer: Log fold change interpretation of time series with Wald test
A: gviz: name of tracks disappeas
Answer: Degust: what normalization method does it use
Answer: ylim and xlim in Enhanced Volcano
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Scholar to Jiang, Mike ★ 1.3k
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