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enrichkegg
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13
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5.1k
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KEGG enrichment in R and gene IDs
KEGG
enrichKEGG
R
entrezid
14 months ago
Laia
▴ 10
1
vote
2
replies
3.8k
views
cnetplot with enrichKEGG results
clusterProfiler
enrichKEGG
cnetplot
2.5 years ago
fatimaruizdelabastida
• 0
2
votes
4
replies
3.1k
views
#clusterProfiler# KEGG enrichment with non-reference species
clusterprofiler
kaas
enrichKEGG
updated 6.8 years ago by
renuka.nayak
• 0 • written 7.7 years ago by
googneed
• 0
2
votes
1
reply
2.1k
views
enrichKEGG
clusterProfiler
enrichKEGG
updated 2.1 years ago by
Guido Hooiveld
★ 4.0k • written 2.1 years ago by
blim4
• 0
0
votes
1
reply
1.5k
views
ClusterProfiler - enrichKEGG on specific pathways
kegg
enrichkegg
clusterprofiler
updated 5 months ago by
EvaLan
• 0 • written 5.8 years ago by
bekah
▴ 40
0
votes
0
replies
1.2k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot
clusterProfiler
enrichKEGG
gseKEGG
5.3 years ago
yurigorelik
▴ 10
0
votes
0
replies
759
views
clusterProfiler GeneRatio minGSSize
enrichKEGG
GeneRatio
5.3 years ago
zhang.jianhai
▴ 10
2
votes
2
replies
279
views
Error in enrichKEGG for a model organism
enrichKEGG
KEGGgraph
KEGG
updated 3 months ago by
Guido Hooiveld
★ 4.0k • written 3 months ago by
cinzia.spagnoli
• 0
8 results • Page
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Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Thank you so much!
Answer: recount3 problem downloading data from source sra
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Leonardo Collado Torres
★ 1.0k
Hi, I wasn't able to reproduce the issue on both bioc 3.19 (current release version) and 3.18 (closer to your session info). My guess is…
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minardsmitha
▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
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66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
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3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
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Answer: Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
Comment: Ensembl plants at annotationHub?
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
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