Biostar Ensembl

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biomart R ensembl

updated 4 weeks ago by Kevin Blighe 3.8k • written 2.7 years ago by rykerklie7 • 0

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382

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biomaRt ensembldb ensembl

4 months ago • updated 9 weeks ago jamie.gearing ▴ 60

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2.9k

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ensembl biomaRt R

updated 4 months ago by SE ▴ 10 • written 10 months ago by kieran.short ▴ 30

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285

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biomaRt ensembldb ensembl

written 5 months ago by Louisse ▴ 10

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2.4k

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ensembl ensembldb plant arabidopsis thaliana annotationhub

updated 5 months ago by Johannes Rainer ★ 2.0k • written 4.3 years ago by Guido Hooiveld ★ 3.6k

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259

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Ensembl biomaRt

7 months ago Hector • 0

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345

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ensembl biomaRt ensembldb

11 months ago Benjamin ▴ 20

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680

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ensembl R

11 months ago ksci ▴ 10

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454

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Ensembl Rsubread

updated 11 months ago by Gordon Smyth 47k • written 11 months ago by agustin.gonvi ▴ 10

9 results • Page 1 of 1

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Answer: How to getting synonymous SNPs from BiomaRt before timing out? by James W. MacDonald 62k

Asking for multiple things at once will tend to blow out your results, as you will get every possible combination. ``` > options(timeou…

Comment: Definition of disease_subtype abbreviations by Lucas Schiffer ▴ 240

Hi Sehyun, I do not know myself and can only find one reference in the [template.csv](https://github.com/waldronlab/curatedMetagenomicDataC…

Answer: Are polynomial contrasts for a time factor possible in DESeq2? by ATpoint ★ 2.3k

As you can use a model.matrix() as input for the design you can use a great variety of models. A great read is this work from Ritchie/Smyth…

Comment: does anyone how to create rarefaction curves from a phyloseq object? by RMiller • 0

I am not sure what you have tried, but the "vegan" library (package) has the ability to do rarefaction. So make sure to load `library("veg…

Answer: MSA package fails to be installed - installation of package ‘msa’ had non-zero by stitam • 0

Hi, I came across the same issue when trying to install `msa` in a docker (singularity) container. My base image was `debian:bullseye-20230…

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Are polynomial contrasts for a time factor possible in DESeq2?

Answer: How to deal with the negative values from EBPlusPlusAdjustPANCAN_IlluminaHiSeq_R

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

A: Pathway analysis of differentially methylated CpGs

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va

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Popular Question to Robert Castelo ★ 3.0k