Bioconductor Error

Showing : error • reset

votes

replies

6.9k

views

error lazy R biomaRt table

updated 6 weeks ago by juo5 • 0 • written 6 months ago by Abhishek ▴ 10

votes

replies

3.4k

views

deseq2 differential expression error

updated 10 months ago by snow34 • 0 • written 6.6 years ago by ap3637 • 0

votes

replies

1.6k

views

error RStudio ggplot2 DESeq2

updated 5 months ago by James W. MacDonald 65k • written 6 months ago by BioES • 0

votes

replies

1.1k

views

error SingleCell annotate

updated 5 months ago by yw24418 • 0 • written 14 months ago by sandra.garces.19 • 0

votes

replies

631

views

Config DiffBind Error

updated 9 months ago by Rory Stark ★ 5.2k • written 9 months ago by jason.kost • 0

votes

479

views

customProDB easyrun error mm10 Mus_musculus_Data

updated 11 months ago by James W. MacDonald 65k • written 11 months ago by Esraa • 0

votes

403

views

TCGAbiolinks error GDC_prepare

6 months ago leon • 0

votes

replies

283

views

proActiv error estimateSizeFactorsForMatrix

6 months ago Chris • 0

8 results • Page 1 of 1

Recent ...

Replies

Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

Votes

Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

Awards • All