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exome
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edgeR for looking at differences in coverage?
edgeR
exome
updated 5.5 years ago by
Aaron Lun
★ 28k • written 5.5 years ago by
am3
• 0
0
votes
1
reply
1.2k
views
Whole exomes: number of genes, polymorphism
whole exome sequence
R
bioconductor
exome
7.7 years ago
bioinf
▴ 10
3
votes
6
replies
1.9k
views
Whole exome: BAM statistics and other relevant information
rsamtools
whole exome sequence
bam
exome
R
7.8 years ago
bioinf
▴ 10
0
votes
0
replies
1.4k
views
any ideas on a workflow for exome seq data analysis with R?
exome
dnaseq
WES
8.4 years ago
arvand.akbari
• 0
0
votes
1
reply
1.6k
views
ExomeDepth Package Error Messages
cnv
exome
8.7 years ago
Bio152
▴ 150
5 results • Page
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Comment: Problem at champ.load
by
icecreamlover
• 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation
by
icecreamlover
• 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected.
by
Adam
• 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Votes
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
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