Bioconductor Exome

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edgeR exome

updated 6.7 years ago by Aaron Lun ★ 29k • written 6.7 years ago by am3 • 0

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1.5k

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whole exome sequence R bioconductor exome

8.9 years ago bioinf ▴ 10

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2.5k

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rsamtools whole exome sequence bam exome R

9.0 years ago bioinf ▴ 10

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1.7k

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exome dnaseq WES

9.6 years ago arvand.akbari • 0

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2.0k

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cnv exome

9.9 years ago Bio152 ▴ 150

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Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Ah, this is handy! Hopefully this will help with troubleshooting; at the very least, I can see it being helpful when I try to explain to pe…

Answer: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

You may want to look at the coefficients you are trying to estimate with ExploreModelMatrix: https://www.bioconductor.org/packages/relea…

Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by emily.wolfrum • 0

Hi Gordon, Thanks for the quick reply. The technical or process blank samples I'm referring to are part of a set of quality control sampl…

Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Answer: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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