Bioconductor ExomeCopy

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548

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exomeCopy

updated 23 months ago by Michael Love 42k • written 23 months ago by joel.wallenius • 0

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652

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exomeCopy

updated 24 months ago by Michael Love 42k • written 24 months ago by ef.kafantari • 0

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579

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exomeCopy CNV WES

3.1 years ago Cheng • 0

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707

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exomeCopy

updated 4.8 years ago by Michael Love 42k • written 4.8 years ago by kkyung412 • 0

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784

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exomecopy

updated 6.2 years ago by Michael Love 42k • written 6.2 years ago by chiara.rigobello • 0

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1.0k

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exomecopy cnv

6.3 years ago ramakrishnas • 0

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983

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exomecopy

updated 6.5 years ago by Michael Love 42k • written 6.5 years ago by sruddy17 • 0

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1.2k

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cnv exomecopy

updated 8.5 years ago by Michael Love 42k • written 8.5 years ago by cafelumiere12 ▴ 20

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1.3k

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exomecopy exon array analysis CODEX

9.0 years ago kaushal Raj Chaudhary ▴ 10

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1.5k

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exomeCopy exomeCopy

updated 11.0 years ago by Michael Love 42k • written 11.0 years ago by Kevin Lee ▴ 40

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935

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exomeCopy exomeCopy

updated 11.1 years ago by Michael Love 42k • written 11.1 years ago by Guru Ananda ▴ 10

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917

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Sequencing exomeCopy Sequencing exomeCopy

11.4 years ago love ▴ 150

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1.1k

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Sequencing exomeCopy Sequencing exomeCopy

11.4 years ago Guest User ★ 13k

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2.4k

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exomeCopy exomeCopy

updated 11.7 years ago by love ▴ 150 • written 11.7 years ago by Lescai, Francesco ▴ 380

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2.6k

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IRanges exomeCopy IRanges exomeCopy

updated 11.8 years ago by love ▴ 150 • written 11.8 years ago by Lescai, Francesco ▴ 380

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1.1k

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exomeCopy exomeCopy

updated 11.8 years ago by Martin Morgan 25k • written 11.8 years ago by Lescai, Francesco ▴ 380

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1.3k

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exomeCopy exomeCopy

updated 12.1 years ago by love ▴ 150 • written 12.1 years ago by Dan Spiegelman ▴ 10

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875

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exomeCopy exomeCopy

12.2 years ago love ▴ 150

18 results • Page 1 of 1

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

To me, 100 and 200 kb both look fine. You want to have blocks smaller than segmentation regions.

Comment: ChAMP installation issue by e1271094 • 0

I discovered that the dataset data("probe.features.epicv1") is unavailable. Instead, the dataset data("probe.features.epic") is accessible.…

Comment: ChAMP installation issue by e1271094 • 0

I apologise for any inconvenience. I have successfully installed the ChAMP package. However, I am now encountering a new error: myLoad <- …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Yes, blockLength=200000, and seg=seg. I am concerned about the inter-feature distance of features. I generated this plot for various bloc…

Answer: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k

Can you use `vst` instead of `rlog` and increase to 1000 or 2000 genes? I'm wondering if there's a way to characterize these 7 samples. …

Votes

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Answer: Error EPICv2 ChAMP

Comment: Store output of matchPWM()

Answer: Store output of matchPWM()

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Scholar to mat149 ▴ 70