Bioconductor Exon

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DEXSeq exon_definition exon

updated 9 months ago by Alejandro Reyes ★ 1.9k • written 10 months ago by zhangpeng1202 • 0

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380

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exon AnnotationHubData

11 months ago mahima.g • 0

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827

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splicing Exon featureCounts subread DEXSeq

23 months ago NIK • 0

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638

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DEXSeq exon

updated 2.1 years ago by Alejandro Reyes ★ 1.9k • written 2.1 years ago by jochen • 0

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1.3k

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DEXSeq exon memory dispersions estimateDispersions

4.0 years ago andreismolnikov00 • 0

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1.4k

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Annotatr CDS Exon UTR

updated 6.2 years ago by rcavalca ▴ 140 • written 6.2 years ago by xie186 • 0

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2.8k

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rsubread featurecounts exon mRNAseq

updated 6.9 years ago by Wei Shi ★ 3.6k • written 6.9 years ago by inah ▴ 10

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1.8k

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rnaseq exon quasr

updated 9.4 years ago by Steve Lianoglou ★ 13k • written 9.4 years ago by sven.schuierer • 0

8 results • Page 1 of 1

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Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Votes

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

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Popular Question to James W. MacDonald 65k

Scholar to Michael Love 41k

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