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exon
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DEXSeq Exon count not working, please help with an alternative like featureCounts
splicing
Exon
featureCounts
subread
DEXSeq
8 months ago
NIK
• 0
1
vote
1
reply
281
views
Increased number of exons in DEXSeq
DEXSeq
exon
updated 10 months ago by
Alejandro Reyes
★ 1.8k • written 10 months ago by
jochen
• 0
1
vote
3
replies
714
views
DEXSeq with large(ish) number of samples
DEXSeq
exon
memory
dispersions
estimateDispersions
2.8 years ago
andreismolnikov00
• 0
1
vote
3
replies
855
views
How can I use Annotatr on CDS?
Annotatr
CDS
Exon
UTR
updated 5.0 years ago by
rcavalca
▴ 140 • written 5.0 years ago by
xie186
• 0
0
votes
3
replies
2.3k
views
read count summed over exons is greater tham the gene-level read count using featureCounts
rsubread
featurecounts
exon
mRNAseq
updated 5.7 years ago by
Wei Shi
★ 3.5k • written 5.7 years ago by
inah
▴ 10
0
votes
2
replies
1.3k
views
quasR - how are exon identifiers for exon counts determined
rnaseq
exon
quasr
updated 8.2 years ago by
Steve Lianoglou
13k • written 8.2 years ago by
sven.schuierer
• 0
6 results • Page
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Comment: athPkgBuilder data source :missing probesets
by
nicklesteele532
• 0
> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…
Comment: Why in Bioconductor community people rarely upvote questions?
by
Hervé Pagès
16k
BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …
Answer: DESeq2 and heatmap for multiple comparisons
by
swbarnes2
★ 1.2k
If you want to know what genes are different between lesion and treated, compare them to each other.
Comment: Why in Bioconductor community people rarely upvote questions?
by
Gordon Smyth
47k
I looked at the responses to your posts because you said that you felt discouraged.
Votes
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
C: Batch correction in DESeq2
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
A: Calculate S/N ratios from apeglm for GSEA
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