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fastMNN
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0
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2
replies
1.1k
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Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN
SingleCellData
BatchEffect
batchelor
12 months ago
José
• 0
0
votes
3
replies
1.8k
views
scRNA-seq: RS4' object has no attribute 'T'" in fastMNN R function
scanpy
scRNAseq
fastmnn
r
3.1 years ago
Madiha
• 0
4
votes
2
replies
1.8k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor
fastMNN
scRNAseq
3.3 years ago
Guandong Shang
▴ 40
0
votes
4
replies
3.0k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater
batchelor
scRNAseq
fastMNN
updated 3.3 years ago by
Aaron Lun
★ 29k • written 3.3 years ago by
Guandong Shang
▴ 40
2
votes
2
replies
1.7k
views
Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn
batchelor
BatchEffect
4.1 years ago
p.joshi
▴ 40
3
votes
1
reply
1.8k
views
Scaling option in fastMNN
fastmnn
scater
batchelor
updated 5.4 years ago by
Aaron Lun
★ 29k • written 5.4 years ago by
ATpoint
★ 5.0k
0
votes
0
replies
909
views
fastMNN reconstructed matrix
fastMNN
Interpretation
5.4 years ago
mloza
▴ 10
2
votes
1
reply
1.6k
views
batchelor batch correction correction runs into errors
batchelor
batch-correction
mnncorrect
fastmnn
rna-seq
updated 5.6 years ago by
Aaron Lun
★ 29k • written 6.2 years ago by
firestar
▴ 20
1
vote
2
replies
2.1k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN
CITE-seq
ADT-seq
batchelor
REAP-seq
updated 5.6 years ago by
Aaron Lun
★ 29k • written 5.6 years ago by
sorjuelal
• 0
1
vote
2
replies
1.8k
views
SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN
fastMNN
mnnCorrect
updated 7.3 years ago by
Aaron Lun
★ 29k • written 7.3 years ago by
tobi
• 0
10 results • Page
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
by
Matthew Thornton
▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated
by
RalphSavage99
• 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2
by
shepherl
4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Votes
Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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