Bioconductor FastMNN

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1.1k

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fastMNN SingleCellData BatchEffect batchelor

12 months ago José • 0

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1.7k

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scanpy scRNAseq fastmnn r

3.0 years ago Madiha • 0

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1.8k

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batchelor fastMNN scRNAseq

3.2 years ago Guandong Shang ▴ 40

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2.9k

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scater batchelor scRNAseq fastMNN

updated 3.2 years ago by Aaron Lun ★ 29k • written 3.2 years ago by Guandong Shang ▴ 40

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1.6k

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fastmnn batchelor BatchEffect

4.1 years ago p.joshi ▴ 40

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1.7k

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fastmnn scater batchelor

updated 5.3 years ago by Aaron Lun ★ 29k • written 5.3 years ago by ATpoint ★ 5.0k

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891

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fastMNN Interpretation

5.4 years ago mloza ▴ 10

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1.5k

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batchelor batch-correction mnncorrect fastmnn rna-seq

updated 5.5 years ago by Aaron Lun ★ 29k • written 6.2 years ago by firestar ▴ 20

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2.0k

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fastMNN CITE-seq ADT-seq batchelor REAP-seq

updated 5.6 years ago by Aaron Lun ★ 29k • written 5.6 years ago by sorjuelal • 0

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1.8k

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SCRAN fastMNN mnnCorrect

updated 7.3 years ago by Aaron Lun ★ 29k • written 7.3 years ago by tobi • 0

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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k

Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…

Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0

Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…

Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0

Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…

Comment: Memory error while running alignments by Erik Wright ▴ 150

How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…

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Comment: Check removeBatchEffect effectiveness

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?

Answer: DESeq2 design for haplotype MPRA

A: Different logFC (log2foldchange) values for genes from limma-voom and other too

Comment: Check removeBatchEffect effectiveness

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