Showing : fastMNN • reset
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Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN SingleCellData BatchEffect batchelor
14 months ago José • 0
0
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3
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1.8k
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scRNA-seq: RS4' object has no attribute 'T'" in fastMNN R function
scanpy scRNAseq fastmnn r
3.3 years ago Madiha • 0
4
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2
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1.9k
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how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor fastMNN scRNAseq
3.4 years ago Guandong Shang ▴ 40
0
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4
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3.1k
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how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater batchelor scRNAseq fastMNN
updated 3.4 years ago by ★ 29k • written 3.4 years ago by ▴ 40
2
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2
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1.7k
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Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn batchelor BatchEffect
4.3 years ago p.joshi ▴ 40
3
votes
1
reply
1.8k
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Scaling option in fastMNN
fastmnn scater batchelor
updated 5.6 years ago by ★ 29k • written 5.6 years ago by ★ 5.0k
0
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0
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944
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fastMNN reconstructed matrix
fastMNN Interpretation
5.6 years ago mloza ▴ 10
2
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1
reply
1.6k
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batchelor batch correction correction runs into errors
batchelor batch-correction mnncorrect fastmnn rna-seq
updated 5.7 years ago by ★ 29k • written 6.4 years ago by ▴ 20
1
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2
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2.1k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN CITE-seq ADT-seq batchelor REAP-seq
updated 5.8 years ago by ★ 29k • written 5.8 years ago by • 0
1
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2
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1.8k
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SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN fastMNN mnnCorrect
updated 7.5 years ago by ★ 29k • written 7.5 years ago by • 0
10 results • Page 1 of 1
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Comment: Guitar R package requires update due to dependency GenomicFeatures by ferran.llobet.cabau ▴ 10
Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
Comment: Ensembl plants at annotationHub? by Guido Hooiveld ★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond by Ludwig Geistlinger ▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Votes
Comment: Guitar R package requires update due to dependency GenomicFeatures
A: how to control age and gender effect in expression data using DESeq2
limma moderated t-statistics and B-statistics
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
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