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fastMNN
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0
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2
replies
1.2k
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Integration of Single Cell Experiments with batchelor::fastMNN
fastMNN
SingleCellData
BatchEffect
batchelor
14 months ago
José
• 0
0
votes
3
replies
1.8k
views
scRNA-seq: RS4' object has no attribute 'T'" in fastMNN R function
scanpy
scRNAseq
fastmnn
r
3.3 years ago
Madiha
• 0
4
votes
2
replies
1.9k
views
how to do downstram analysis to cells which are subsetted after MNN batch-correction
batchelor
fastMNN
scRNAseq
3.4 years ago
Guandong Shang
▴ 40
0
votes
4
replies
3.1k
views
how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more readable
scater
batchelor
scRNAseq
fastMNN
updated 3.4 years ago by
Aaron Lun
★ 29k • written 3.4 years ago by
Guandong Shang
▴ 40
2
votes
2
replies
1.7k
views
Does MNN removes same average batch vector from all cells or each cell has it's own correction vector?
fastmnn
batchelor
BatchEffect
4.3 years ago
p.joshi
▴ 40
3
votes
1
reply
1.8k
views
Scaling option in fastMNN
fastmnn
scater
batchelor
updated 5.6 years ago by
Aaron Lun
★ 29k • written 5.6 years ago by
ATpoint
★ 5.0k
0
votes
0
replies
944
views
fastMNN reconstructed matrix
fastMNN
Interpretation
5.6 years ago
mloza
▴ 10
2
votes
1
reply
1.6k
views
batchelor batch correction correction runs into errors
batchelor
batch-correction
mnncorrect
fastmnn
rna-seq
updated 5.7 years ago by
Aaron Lun
★ 29k • written 6.4 years ago by
firestar
▴ 20
1
vote
2
replies
2.1k
views
how to integrate multiple samples from ADT-seq (CITE-seq) with fastMNN
fastMNN
CITE-seq
ADT-seq
batchelor
REAP-seq
updated 5.8 years ago by
Aaron Lun
★ 29k • written 5.8 years ago by
sorjuelal
• 0
1
vote
2
replies
1.8k
views
SCRAN - Question: Error when calling cosineNorm through fastMNN
SCRAN
fastMNN
mnnCorrect
updated 7.5 years ago by
Aaron Lun
★ 29k • written 7.5 years ago by
tobi
• 0
10 results • Page
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Comment: Ensembl plants at annotationHub?
by
Guido Hooiveld
★ 4.1k
Hope you don't mind I am not Johannes... ;-) Note that you nowadays can generate these yourselves using the `docker` image Johannes made av…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in
by
jtsy6383
• 0
Thanks for the reminder about DiffVar (for that project I ended up using GAMLSS in the end and haven't touched DiffVar since) and the alter…
Comment: Ensembl plants at annotationHub?
by
jwp48
• 0
Dear Johannes, Would it be possible to generate a EnsDb for the newest Medicago V5 genome release? Medicago truncatula A17 r5.0 This woul…
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
by
Ludwig Geistlinger
▴ 80
When referring to the OSCA book including individual sub-books please cite the OSCA paper: Amezquita, R.A., Lun, A.T.L., Becht, E. et a…
Comment: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
by
Sean Davis
21k
Just FYI, I added a github issue to track: https://github.com/OSCA-source/OSCA.advanced/issues/27
Votes
A: how to control age and gender effect in expression data using DESeq2
limma moderated t-statistics and B-statistics
A: how to control age and gender effect in expression data using DESeq2
how to control age and gender effect in expression data using DESeq2
Answer: please provide a BibTeX citation for "Advanced Single-Cell Analysis with Biocond
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