Bioconductor Feature selection

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sigFeature svm-rfe sigCVError feature selection

4.5 years ago rekren ▴ 20

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rnaseq machine learning feature selection

updated 6.1 years ago by chris86 ▴ 420 • written 6.1 years ago by marak • 0

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limma clustering differential gene expression hierarchical clustering feature selection

7.3 years ago • updated 7.2 years ago lirongrossmann ▴ 80

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microarray biobase feature selection t.test R

updated 9.3 years ago by svlachavas ▴ 840 • written 9.3 years ago by babumanish837 ▴ 10

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Answer: Build error on kunpeng2 Linux aarch64 by James W. MacDonald 67k

This isn't the place for developer questions. Please use the developer listserv at bioc-devel@r-project.org instead. Also, you might wan…

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by James W. MacDonald 67k

You should use `useEnsembl` as the error recommends. ``` > library(biomaRt) > mart <- useEnsembl("ensembl", "rnorvegicus_gene_ensembl") > …

Comment: Deseq2 Design by James W. MacDonald 67k

The other thing I forgot to mention is that you need to specify a cell means model to `DESeq`. Here's an example. ``` > library(DESeq2) > …

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore by Benjamin ▴ 20

I had access temporarily to the rat genome, but now it looks like ensemble 113 is completely down as I have this error: Error : Your q…

Comment: Deseq2 Design by pm_25 • 0

Thanks James for the prompt answer! your explanation makes more sense. in your example, when creating the interactions: ```r results(dds,…

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DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Answer: Deseq2 Design

Answer: Fold change calculation in Diffbind vs. DESEQ2?

Fold change calculation in Diffbind vs. DESEQ2?

FeatureCounts Output Counts at Exon Level Using Default Settings, want gene level

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Scholar to James W. MacDonald 67k