Bioconductor Feature selection

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sigFeature svm-rfe sigCVError feature selection

5.4 years ago rekren ▴ 20

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rnaseq machine learning feature selection

updated 6.9 years ago by chris86 ▴ 420 • written 6.9 years ago by marak • 0

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limma clustering differential gene expression hierarchical clustering feature selection

8.1 years ago lirongrossmann ▴ 80

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microarray biobase feature selection t.test R

updated 10.1 years ago by svlachavas ▴ 840 • written 10.1 years ago by babumanish837 ▴ 10

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Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

Comment: deseq2 filter the low counts by Michael Love 43k

Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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