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fgsea
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847
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fgsea/clusterProfiler Packages for nCounter data enrichment analysis
NanoStringDiff
clusterProfiler
fgsea
11 months ago
pg45863
▴ 10
0
votes
0
replies
628
views
using fgsea to compare two datasets
GSEA
fgsea
9 months ago
Cen
• 0
4
votes
2
replies
577
views
Why does GSEA on edgeR results for randomized samples give highly significant p-values?
fgsea
edgeR
8 days ago • updated 4 days ago
gene_bioconductor
▴ 10
0
votes
5
replies
507
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Help with DESeq results to pathways with the fgsea package
fgsea
rna
updated 12 weeks ago by
James W. MacDonald
65k • written 3 months ago by
Gordon
• 0
3
votes
2
replies
392
views
cant' download fgsea_1.20.0.tar.gz
download
fgsea
9 months ago
luca.s
▴ 50
0
votes
2
replies
364
views
The order of those tied genes will be arbitrary, which may produce unexpected results.
fgsea
gsea
7 weeks ago • updated 5 weeks ago
Gordon
• 0
1
vote
5
replies
353
views
fgsea fork
fgsea
updated 5 weeks ago by
James W. MacDonald
65k • written 6 weeks ago by
yimjohns
• 0
3
votes
4
replies
226
views
Method to find pathways different between 2 groups
fgsea
GSVA
CAMERA
updated 2 days ago by
Gordon Smyth
50k • written 4 days ago by
Chris
• 0
2
votes
2
replies
214
views
Perform gene set enrichment analysis using fgsea on two conditions that don't have differential express genes
fgsea
11 days ago • updated 10 days ago
Chris
• 0
0
votes
4
replies
210
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
22 days ago • updated 21 days ago
sropri
• 0
2
votes
2
replies
182
views
fgsea significant result
fgsea
5 days ago
Chris
• 0
0
votes
0
replies
114
views
Empty table plot using plotGseaTable()
fgsea
9 days ago • updated 6 days ago
Chris
• 0
12 results • Page
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Comment: Can't post a question containing code?
by
NATASHA
• 0
did you find a solution? I´m having the same problem
Comment: error
by
NATASHA
• 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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