Bioconductor FilterVcf

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3.2k

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variantannotation vcf readvcf filtervcf scanvcfparam

8.1 years ago Didi ▴ 10

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3.7k

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filtervcf

updated 8.7 years ago by Martin Morgan 25k • written 8.7 years ago by Bogdan ▴ 670

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filtervcf variantannotation

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by stephen sefick ▴ 60

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variantannotation filtervcf

updated 9.8 years ago by Michael Lawrence ★ 11k • written 9.9 years ago by TimothéeFlutre ▴ 80

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variantannotation vcf filtervcf

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by TimothéeFlutre ▴ 80

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variantannotation filtervcf vcf

updated 9.9 years ago by Michael Lawrence ★ 11k • written 9.9 years ago by TimothéeFlutre ▴ 80

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VariantAnnotation filterVcf ScanVcfParam vcf writeVcf

updated 10.1 years ago by Martin Morgan 25k • written 10.1 years ago by pau.puigdevall • 0

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VariantAnnotation filterVcf

10.1 years ago pau.puigdevall • 0

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variantannotation filterVcf readvcfasvranges filterRules

updated 10.5 years ago by Martin Morgan 25k • written 10.5 years ago by Sigve Nakken ▴ 50

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Comment: WGCNA analysis on RNAseq and proteoimcs data by sum31278 • 0

Hi sagigordon, Can you share how you performed WGCNA analysis for proteomics data? Thanks

Comment: European Bioconductor Conference 2023 planning by inadequate.peacock.iiag • 0

I once faced a dilemma similar to this when coordinating a smaller local event; despite initial hesitation, I learned invaluable skills and…

Comment: ROAST compare results with complex design by Gordon Smyth 52k

It's also worth pointing out that the syntax for `camera` and `mroast` is the same, so I wonder how OP did the earlier `camera` analysis.

Answer: ROAST compare results with complex design by James W. MacDonald 68k

You are specifying that the last column of your design should be used as the contrast. You should instead use `contrast[,1]`, which will us…

Comment: How to account for solvent controls in DESeq2 when comparing follicular vs lutea by James W. MacDonald 68k

Yes. You can infer that by figuring out what each coefficient measures. Here is your design matrix: ``` > targets ID Name phase G…

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Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

Comment: Using DESeq2 on single cell RNA Seq data of same cell type but different conditi

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