Bioconductor FilterVcf

Showing : filterVcf • reset

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2.9k

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variantannotation vcf readvcf filtervcf scanvcfparam

7.3 years ago Didi ▴ 10

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3.3k

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filtervcf

updated 7.9 years ago by Martin Morgan 25k • written 7.9 years ago by Bogdan ▴ 670

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filtervcf variantannotation

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by stephen sefick ▴ 60

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1.3k

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variantannotation filtervcf

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by TimothéeFlutre ▴ 80

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1.5k

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variantannotation vcf filtervcf

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by TimothéeFlutre ▴ 80

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1.3k

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variantannotation filtervcf vcf

updated 9.1 years ago by Michael Lawrence ★ 11k • written 9.1 years ago by TimothéeFlutre ▴ 80

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1.7k

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VariantAnnotation filterVcf ScanVcfParam vcf writeVcf

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by pau.puigdevall • 0

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1.7k

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VariantAnnotation filterVcf

9.3 years ago pau.puigdevall • 0

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2.3k

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variantannotation filterVcf readvcfasvranges filterRules

updated 9.8 years ago by Martin Morgan 25k • written 9.8 years ago by Sigve Nakken ▴ 50

9 results • Page 1 of 1

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Answer: Deseq2 res Function by Michael Love 43k

> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…

Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Votes

Answer: Deseq2 res Function

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

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