Bioconductor FilterVcf

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2.9k

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variantannotation vcf readvcf filtervcf scanvcfparam

7.4 years ago Didi ▴ 10

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3.4k

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filtervcf

updated 8.0 years ago by Martin Morgan 25k • written 8.0 years ago by Bogdan ▴ 670

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filtervcf variantannotation

updated 8.2 years ago by Martin Morgan 25k • written 8.2 years ago by stephen sefick ▴ 60

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1.4k

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variantannotation filtervcf

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by TimothéeFlutre ▴ 80

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1.5k

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variantannotation vcf filtervcf

updated 9.2 years ago by Martin Morgan 25k • written 9.2 years ago by TimothéeFlutre ▴ 80

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1.3k

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variantannotation filtervcf vcf

updated 9.2 years ago by Michael Lawrence ★ 11k • written 9.2 years ago by TimothéeFlutre ▴ 80

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1.7k

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VariantAnnotation filterVcf ScanVcfParam vcf writeVcf

updated 9.4 years ago by Martin Morgan 25k • written 9.4 years ago by pau.puigdevall • 0

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1.7k

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VariantAnnotation filterVcf

9.4 years ago pau.puigdevall • 0

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2.3k

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variantannotation filterVcf readvcfasvranges filterRules

updated 9.9 years ago by Martin Morgan 25k • written 9.9 years ago by Sigve Nakken ▴ 50

9 results • Page 1 of 1

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Answer: promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000 by James W. MacDonald 67k

If you use `promoters` and do not provide an argument for something that has a default, you will get the default argument. Your last call t…

Comment: org.Hs.eg.db issue by k.panov • 0

installed R on another PC, works perfectly. ergo, problem outside of R probably..... :-(

Comment: MBDseq analysis using qsea package by Lukas ▴ 20

Hi, I checked in with Matthias and here is his response: You need to indicate "samples": "The indices of the samples for which individu…

Comment: DESeq2 analysis with transcript counts by sindhuri • 0

Thank you for the response. Currently I am using the R studio for analysis and Im running DESeq2 for analysis of the **transcript counts.ts…

Comment: iam not able to do retrive data using GEOquery R package by James W. MacDonald 67k

Another alternative is to use the `GEOmetadb` package ([vignette here)][1], which will allow you to make queries to identify GEO datasets t…

Votes

Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?

Answer: Issue carrying out DiffBind Analysis at a predefined peak set

Answer: Differential variability modelling with vst() expression

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

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