Biostar Filtervcf

Showing : filtervcf • reset

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1.8k

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variantannotation vcf readvcf filtervcf scanvcfparam

4.8 years ago Didi ▴ 10

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2.0k

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filtervcf

updated 5.4 years ago by Martin Morgan 25k • written 5.4 years ago by Bogdan ▴ 640

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728

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filtervcf variantannotation

updated 5.5 years ago by Martin Morgan 25k • written 5.5 years ago by stephen sefick ▴ 60

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763

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variantannotation filtervcf

updated 6.6 years ago by Michael Lawrence 11k • written 6.6 years ago by TimothéeFlutre ▴ 80

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931

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variantannotation vcf filtervcf

updated 6.6 years ago by Martin Morgan 25k • written 6.6 years ago by TimothéeFlutre ▴ 80

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749

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variantannotation filtervcf vcf

updated 6.6 years ago by Michael Lawrence 11k • written 6.6 years ago by TimothéeFlutre ▴ 80

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VariantAnnotation filterVcf ScanVcfParam vcf writeVcf

updated 6.8 years ago by Martin Morgan 25k • written 6.8 years ago by pau.puigdevall • 0

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1.0k

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VariantAnnotation filterVcf

6.8 years ago pau.puigdevall • 0

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1.5k

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variantannotation filterVcf readvcfasvranges filterRules

updated 7.3 years ago by Martin Morgan 25k • written 7.3 years ago by Sigve Nakken ▴ 50

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Comment: Can Differential Isoform expression analysis can be performed using DESeq2 packa by priyanka.m • 0

Thank you for the suggestions. I will try to compare my results and accordingly interpret the two.

Answer: [sva] Error in density.default(x, adjust = adj) : 'x' contains missing values by wahaha • 0

I found the reason, because some gene expression levels are 0 in all samples. you can add these code to check the data: >exp_mean <- appl…

Answer: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

The comment from @mikelove about specifying numeric contrasts answered my question. This code is not standalone, but I will leave it here i…

Comment: DESeq2 how to specify contrast to test difference of differences by Nicole • 0

Thank you, @mikelove - that did it! The results make sense now. From my original post, could you clarify what the `group1w.sexfemale` contr…

Comment: Rsamtools is not available for (for R version 4.0.2) by olinares-perdomo • 0

I had the same problem (R 4.2.0) I used BiocManager::install("Rsamtools", force = TRUE) And it is working fine

Votes

Answer: DESeq2 how to specify contrast to test difference of differences

Comment: DESeq2 how to specify contrast to test difference of differences

Answer: Confused about the design matrix in edgeR: How to tell R to consider one level a

Answer: biomaRt error unable to fix: need help troubleshooting

Answer: edgeR : results from goana and kegga functions show opposite sig. p-value

Awards • All

Scholar to Nicole • 0

Teacher to Michael Love 37k