Bioconductor Scanvcfparam

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VariantAnnotation subset ScanVcfParam

updated 3.4 years ago by Martin Morgan 25k • written 3.4 years ago by Dario Strbenac ★ 1.5k

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variantannotation vcf readvcf filtervcf scanvcfparam

6.1 years ago Didi ▴ 10

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R variantannotation vcf scanvcfparam readvcf

updated 7.3 years ago by Michael Lawrence 11k • written 7.3 years ago by emily.mccann • 0

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VariantAnnotation filterVcf ScanVcfParam vcf writeVcf

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by pau.puigdevall • 0

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Comment: DataFrame Construction With Non-standard Column by ATpoint ★ 3.4k

Out of interest, `SimpleList()` works without `I()`, why is that?

Answer: DataFrame Construction With Non-standard Column by Hervé Pagès 16k

You need to protect the list by wrapping it in `I()`, otherwise the `DataFrame()` constructor interprets it as a list of 3 columns (so it t…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

Thank you, I have a very clear understanding of the situation. > COO_Sparse_HDF5RealizationSink(), writeHDF5SparseArray(), COO_H5SparseArr…

Comment: Speeding up of DelayedArray::write_block() by Koki ▴ 10

There are a few places inside my `DelayedTensor` package that use `SparseArraySeed`. Will these stop working in next coming BioC 3.18, whe…

Comment: DelayedArray::read_sparse_block by Hervé Pagès 16k

No. But I will need to modify the `write_block()` method for TENxRealizationSink implemented in **HDF5Array** to make it handle blocks that…

Votes

Answer: Further analysis after limma regression output

A: collapseReplicates in DESeq2

Answer: DataFrame Construction With Non-standard Column

Steps needed to change design (relevel factors) in DESeq2

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