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filterVcf
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2
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5
replies
2.6k
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VariantAnnotation: Error with ScanVcfParam
variantannotation
vcf
readvcf
filtervcf
scanvcfparam
6.8 years ago
Didi
▴ 10
5
votes
13
replies
3.0k
views
about filtering variants in a VCF file
filtervcf
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
Bogdan
▴ 670
0
votes
1
reply
997
views
VariantAnnotation -filterVcf/FilterRules - 3 fxns as list to FilterRules throughs and erro
filtervcf
variantannotation
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
stephen sefick
▴ 60
2
votes
1
reply
1.2k
views
Error in extractROWS(x, eval(filter, x))
variantannotation
filtervcf
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.6 years ago by
TimothéeFlutre
▴ 80
2
votes
2
replies
1.4k
views
a filter works alone but not with other filters
variantannotation
vcf
filtervcf
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
TimothéeFlutre
▴ 80
5
votes
2
replies
1.1k
views
filter "isSnp" for VCF
variantannotation
filtervcf
vcf
updated 8.6 years ago by
Michael Lawrence
★ 11k • written 8.6 years ago by
TimothéeFlutre
▴ 80
0
votes
2
replies
1.5k
views
filterVcf: error with param argument
VariantAnnotation
filterVcf
ScanVcfParam
vcf
writeVcf
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
pau.puigdevall
• 0
3
votes
5
replies
1.5k
views
filterVcf: crash with isSNV() filter argument
VariantAnnotation
filterVcf
8.8 years ago
pau.puigdevall
• 0
4
votes
4
replies
2.1k
views
readVcfAsVRanges + FilterRules
variantannotation
filterVcf
readvcfasvranges
filterRules
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
Sigve Nakken
▴ 50
9 results • Page
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shaunpeterson
• 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network()
by
ninidea
• 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
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anne-laure
• 0
Hello It is a litlle bit late but I do not get how to extract the genes from each cluster identified by see.genes(sigs$sig.genes$Day4vs…
Comment: STRINGdb : error with string_db$plot_network()
by
damian.szk
▴ 80
Your code seems ok. Does the vignette produce the same error? [link to STRINGdb R script vignette][1] [1]: https://www.bioconductor.or…
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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