Bioconductor FitTimeSeries

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edgeR deseq2 rna-seq timecourse fittimeseries

updated 7.5 years ago by Aaron Lun ★ 29k • written 7.5 years ago by jpsf • 0

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metagenomeseq fittimeseries

updated 9.3 years ago by Joseph Nathaniel Paulson ▴ 280 • written 9.4 years ago by wijera81 • 0

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1.4k

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metagenomeseq fittimeseries

updated 9.5 years ago by Joseph Nathaniel Paulson ▴ 280 • written 9.5 years ago by giulia.masetti • 0

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1.8k

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edge timecourse fittimeseries

updated 10.2 years ago by Andrew Bass • 0 • written 10.3 years ago by warren.anderson • 0

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1.8k

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metagenomeSeq fitTimeSeries microbiome

11.1 years ago noelle.noyes ▴ 30

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Comment: Deseq2 DE analysis of host-pathogen samples (model separately or jointly?) by a2a2ddrhaa • 0

For those taking a break from the lab, the CT777 Game download https://ct7777.pk/ offers a high-performance entry into online mobile gaming…

Answer: Subsetting data verses contrasts [DESeq2]? by ATpoint ★ 5.0k

This has been asked many times before, please search for relevant posts. In short: Generally it is least tedious to not split the data and …

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you so much for your help! will try to proceed with the suggestion

Comment: Bulk RNAseq analysis for by Mariami • 0

Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…

Answer: Bulk RNAseq analysis for by Gordon Smyth 53k

All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…

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Comment: Are transformed values from rlog /vst log2 normalized counts?

Are transformed values from rlog /vst log2 normalized counts?

Answer: Bulk RNAseq analysis for

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

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