Bioconductor FitTimeSeries

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edgeR deseq2 rna-seq timecourse fittimeseries

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by jpsf • 0

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1.6k

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metagenomeseq fittimeseries

updated 8.2 years ago by Joseph Nathaniel Paulson ▴ 280 • written 8.2 years ago by wijera81 • 0

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1.1k

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metagenomeseq fittimeseries

updated 8.4 years ago by Joseph Nathaniel Paulson ▴ 280 • written 8.4 years ago by giulia.masetti • 0

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1.5k

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edge timecourse fittimeseries

updated 9.1 years ago by Andrew Bass • 0 • written 9.1 years ago by warren.anderson • 0

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1.5k

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metagenomeSeq fitTimeSeries microbiome

9.9 years ago noelle.noyes ▴ 30

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Answer: Margins for gene_set_enrichment_plot by Leonardo Collado Torres ★ 1.1k

Hi, In version 1.19.4 of `spatialLIBD` @lahuuki re-implemented the `gene_set_enrichment_plot()` function using `ComplexHeatmap::Heatmap(…

Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Maria please read the mirTarRnaSeq paper. In particular, Supplemental Table 2, clarifies all the statistical models, inputs and outputs. If…

Comment: Help using rtracklayer for gene ID extraction by James W. MacDonald 67k

Telling me you can't do something without showing what you tried is not helpful. When posting here, try to put yourself in the shoes of peo…

Comment: miRTarRnaseq library by María Calvo • 0

Hello Mercedeh, excuse me for not explaining it adecuately, Im using the "Part3 - Identify significant miRNA mRNA relationships for 2 time …

Answer: Need new version : tx2gene.gencode.v47.csv by Guido Hooiveld ★ 4.1k

Assuming that you would like to import the results from `salmon`, it is highly recommended to now use `tximeta`. By doing so, all required …

Votes

Whether to build DESeq2 model with all data and then contrast groups or subset groups first, build model and then contrast?

Answer: Feature Counts - potential bug with outfile.jcounts

Answer: Pre-filtering TPM kallisto for ssGSEA / DESeq2

Answer: Mapping Between GenBank ID's and Uniprot

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