Bioconductor FitTimeSeries

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846

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edgeR deseq2 rna-seq timecourse fittimeseries

updated 5.3 years ago by Aaron Lun ★ 28k • written 5.3 years ago by jpsf • 0

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1.2k

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metagenomeseq fittimeseries

updated 7.1 years ago by Joseph Nathaniel Paulson ▴ 280 • written 7.1 years ago by wijera81 • 0

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822

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metagenomeseq fittimeseries

updated 7.3 years ago by Joseph Nathaniel Paulson ▴ 280 • written 7.3 years ago by giulia.masetti • 0

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1.2k

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edge timecourse fittimeseries

updated 8.0 years ago by Andrew Bass • 0 • written 8.1 years ago by warren.anderson • 0

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1.2k

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metagenomeSeq fitTimeSeries microbiome

8.9 years ago noelle.noyes ▴ 30

5 results • Page 1 of 1

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Comment: Timely differentially expressed genes by triZZla • 0

Thanks, but what is the lowest that you have seen in such circumstances ? And did you have systematically calculated it actually or just re…

Comment: DESeq: Error in DESeqDataSet(se, design = design, ignoreRank) : some values i by ATpoint ★ 3.6k

What is the output of below_zero <- apply(miRNA_counts < 0, 1, sum) > 0 miRNA_counts[below_zero,,drop=FALSE]

Comment: Problem loading HDF5Array in R 4.3.2 by Mike Smith ★ 6.2k

Based on the error message this looks like the "invalid permissions" are referring to something in memory rather than your file system. If…

Comment: Problem making orgdb package for bacteria (Pseudomonas) using annotation hub and by Aastha Kapoor • 0

After several attempts the code has worked. I connected to a faster internet connection. set the timeout (1000000) and run the command. I …

Comment: DESeq2 estimateSizeFactors iterate takes too long by Karthik • 0

Hello, I agree with you, and we are in process of working with collaborators, but I wanted to get a general opinion on the data and get a …

Votes

Comment: Ensembl down???

Answer: Limma/DESeq2 for unbalanced nested design (paired samples)

Result from GSEA for non-model organism not as expected

Comment: DESeq2 estimateSizeFactors iterate takes too long

Answer: DESeq2 estimateSizeFactors iterate takes too long

Awards • All

Scholar to Mike Smith ★ 6.2k

Scholar to Hervé Pagès 16k