Bioconductor Edge

Showing : edge • reset

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2.4k

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edgeR edge

updated 3.2 years ago by Gordon Smyth 53k • written 3.2 years ago by Isa • 0

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1.1k

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edge Microarray longitudinal

3.9 years ago emily • 0

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1.4k

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edge DGE microarray

updated 6.2 years ago by Gordon Smyth 53k • written 6.2 years ago by joanasabinopinto • 0

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1.1k

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edge microarray limma affy

6.6 years ago soumyab.g ▴ 10

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897

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edge

6.7 years ago xgt1986627 • 0

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981

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edge RNA-seq

updated 6.7 years ago by James W. MacDonald 68k • written 6.7 years ago by xgt1986627 • 0

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960

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microarray edge

6.7 years ago xgt1986627 • 0

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877

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microarray edge

6.7 years ago xgt1986627 • 0

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1.2k

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edge differential gene expression timecourse interaction

7.5 years ago rubi ▴ 110

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2.4k

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edge qpcr qvalue

8.9 years ago • updated 8.0 years ago joe.d.moore.ii • 0

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1.8k

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edge timecourse fittimeseries

updated 10.2 years ago by Andrew Bass • 0 • written 10.3 years ago by warren.anderson • 0

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2.1k

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edge

updated 10.3 years ago by Aaron Lun ★ 29k • written 10.3 years ago by Arne Muller ▴ 20

12 results • Page 1 of 1

Recent ...

Replies

Comment: GOseq Probability Weight Function bad fit by a2sahaaaq2c • 0

the mobile gaming world offers a different kind of strategic challenge. Many users today are shifting from heavy data processing to lighthe…

Comment: Postdoctoral Fellow (Computational Biology / Bioinformatics) - Neuroepigenetics by mudasarnaeem2020 • 0

Promoting UDISE+ Features on Social Media to Increase Awareness https://udisseplus.com/[enter link description here][1] [1]: https://ud…

Comment: DiffBind plot.profile error by a2sahaaaq2c • 0

To resolve technical errors like installation failures or login issues, first ensure your device allows in the security settings and that…

Comment: soGGi error by shepherl 4.3k

We have tried to contact the soGGi maintainer to have them update the package to the newer version of gglot2 but they have so far been unre…

Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k

No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.

Votes

Answer: DiffBind differential analysis

Answer: Limma-voom sample weights and impact on DEG numbers

C: Why limma, edgeR, and DESeq did not implement fold change moderation first?

Comment: using limma trend workflow in CAMERA

C: z-score with DESeq2?

Awards • All

Popular Question to Guido Hooiveld ★ 4.1k