Bioconductor Edge

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edgeR edge

updated 17 months ago by Gordon Smyth 50k • written 17 months ago by Isa • 0

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edge Microarray longitudinal

2.1 years ago emily • 0

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858

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edge DGE microarray

updated 4.5 years ago by Gordon Smyth 50k • written 4.5 years ago by joanasabinopinto • 0

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edge microarray limma affy

4.9 years ago soumyab.g ▴ 10

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edge

4.9 years ago xgt1986627 ▴ 10

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616

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edge RNA-seq

updated 4.9 years ago by James W. MacDonald 65k • written 4.9 years ago by xgt1986627 ▴ 10

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642

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microarray edge

4.9 years ago xgt1986627 ▴ 10

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microarray edge

4.9 years ago xgt1986627 ▴ 10

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edge differential gene expression timecourse interaction

5.7 years ago rubi ▴ 110

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edge qpcr qvalue

7.2 years ago • updated 6.2 years ago joe.d.moore.ii • 0

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edge timecourse fittimeseries

updated 8.4 years ago by Andrew Bass • 0 • written 8.5 years ago by warren.anderson • 0

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edge

updated 8.5 years ago by Aaron Lun ★ 28k • written 8.5 years ago by Arne Muller ▴ 20

12 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0