Bioconductor FlowTrans

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flowCore FlowCytometryData flowTrans flow

3.4 years ago hamiltond ▴ 10

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flow Cytometry flowCore flowTrans

6.5 years ago carlos.x.martinez-fleites • 0

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flowtrans flow cytometry flowcore

updated 8.9 years ago by Jiang, Mike ★ 1.3k • written 8.9 years ago by peter.rubbens • 0

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flowtrans flowcore

updated 9.2 years ago by Jiang, Mike ★ 1.3k • written 9.2 years ago by niklaus.hurlimann • 0

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flowTrans bioexponential transform

10.7 years ago AJC ▴ 10

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Comment: 3-factor DESeq2 trime-series analysis by swbarnes2 ★ 1.4k

What does your PCA look like? A lot of times, I find that different cell lines are so different from each other, that they should not be d…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by yongjie.wang • 0

Thanks for your reply. " normFactors <- exp(-1 * offst(set2)) normFactors <- normFactors / exp(rowMeans(log(normFactors))) normalizat…

Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

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Answer: Limpa Pipeline Order

A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

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Popular Question to Assa Yeroslaviz ★ 1.5k