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flowTrans
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Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore
FlowCytometryData
flowTrans
flow
2.0 years ago
hamiltond
▴ 10
1
vote
5
replies
1.7k
views
Flow cytometry optimization of transformation parameters
flow Cytometry
flowCore
flowTrans
5.1 years ago
carlos.x.martinez-fleites
• 0
0
votes
6
replies
1.6k
views
Error biexponential transform flowTrans
flowtrans
flow cytometry
flowcore
updated 7.5 years ago by
Jiang, Mike
★ 1.3k • written 7.5 years ago by
peter.rubbens
• 0
0
votes
1
reply
1.2k
views
error flowtrans cytof flowFrame
flowtrans
flowcore
updated 7.8 years ago by
Jiang, Mike
★ 1.3k • written 7.8 years ago by
niklaus.hurlimann
• 0
0
votes
0
replies
1.6k
views
bioexponential transform - flowTrans question
flowTrans
bioexponential transform
9.3 years ago
AJC
▴ 10
5 results • Page
1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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shepherl
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Gordon Smyth
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