Bioconductor Flowcore

Showing : flowcore • reset

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245

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flowWorkspace flowCore CytoML

updated 4 weeks ago by SamGG ▴ 350 • written 9 weeks ago by jarod ▴ 30

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363

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flowCore

updated 4 months ago by James W. MacDonald 65k • written 4 months ago by Gabriel ▴ 10

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372

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flowCore cytoMEM

9 months ago aguirre ▴ 20

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497

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Source flowCore Repository git

updated 12 months ago by shepherl 3.8k • written 12 months ago by dominic.r • 0

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213

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flowDensity flowCore

3 months ago info ▴ 10

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418

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Partec read.FCS flowCore

5 months ago mrescan • 0

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1.7k

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ncdfFlow flowCore

updated 7 months ago by osayou • 0 • written 3.5 years ago by anders.tondell ▴ 30

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106

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FlowCytometry flowWorkspace flowCore

5 weeks ago taylor.witte • 0

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880

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read.FCS flowCore

updated 4 months ago by SamGG ▴ 350 • written 4 months ago by das.traveller • 0

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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10

Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…

Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k

Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…

Answer: ATACseq merge peaks by ATpoint ★ 4.0k

That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by camp ▴ 10

Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Votes

Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length

Comment: Deseq2. decontXcounts not integers. Useful alternative?

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

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Popular Question to James W. MacDonald 65k

Scholar to Michael Love 41k

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