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frmaTools
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2.6k
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Seperate quantile normalization but common probe summary by median polish (oligo package)?
Normalization
probe
oligo
frma
frmaTools
Normalization
probe
oligo
frma
frmaTools
11.8 years ago
Schott, Johanna
▴ 20
2
votes
8
replies
2.5k
views
frma vectors for GPL13158 (Affymetrix HT HG-U133+ PM Array Plate)?
frma
frmatools
updated 9.3 years ago by
Matthew McCall
▴ 830 • written 9.3 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
4
replies
1.6k
views
fRMA error - unable to create unique mapping
frma
frmatools
affy
updated 7.6 years ago by
Matthew McCall
▴ 830 • written 7.6 years ago by
yesitsjess
• 0
0
votes
6
replies
1.6k
views
barcode with custom CDF
cdf
frma
frmaTools
cdf
frma
frmaTools
updated 11.1 years ago by
Stephen Piccolo
▴ 590 • written 11.1 years ago by
Guest User
★ 13k
0
votes
2
replies
1.5k
views
frma for Nimblegen arrays?
Microarray
Annotation
Normalization
affy
PROcess
safe
frma
frmaTools
Microarray
affy
updated 11.5 years ago by
Benilton Carvalho
★ 4.3k • written 11.5 years ago by
wrighth
▴ 260
2
votes
2
replies
1.4k
views
Strategies for fRMA on custom dataset(s)?
frma
frmatools
updated 9.3 years ago by
Matthew McCall
▴ 830 • written 9.3 years ago by
Ryan C. Thompson
★ 7.9k
0
votes
2
replies
1.2k
views
How many arrays are "enough" for creating useful fRMA vectors?
annotation
frma
frmatools
updated 9.4 years ago by
Matthew McCall
▴ 830 • written 9.4 years ago by
Tim Triche
★ 4.2k
2
votes
3
replies
1.2k
views
How to create vectors (makeVectorsAffyBatch) , using own cdf
affymetrix microarrays
frmatools
altcdfenvs
updated 6.2 years ago by
Matthew McCall
▴ 830 • written 6.2 years ago by
osieman52
• 0
0
votes
0
replies
1.2k
views
In the frmaTools package, how can I makeVectorsFeatureSet() output include probeVecCore like the pre-built vectors?
frma
frmatools
affymetrix microarrays
8.1 years ago
jperezrogers
• 0
0
votes
1
reply
1.1k
views
Seperate quantile normalization but common probe summary by median polish (oligo package)?
Normalization
probe
frma
frmaTools
Normalization
probe
frma
frmaTools
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
frmaTools library error :: makeVectorsAffyBatch() function
Microarray
probe
frma
frmaTools
Microarray
probe
frma
frmaTools
updated 10.9 years ago by
Matthew McCall
▴ 830 • written 10.9 years ago by
Tae-Hoon Chung
▴ 70
0
votes
2
replies
1.1k
views
error in makeVectorsAffyBatch of frmaTools package
cdf
frmaTools
cdf
frmaTools
updated 10.9 years ago by
Matthew McCall
▴ 830 • written 10.9 years ago by
Ty Thomson
▴ 100
0
votes
1
reply
1.1k
views
frmaTools library error :: makeVectorsAffyBatch() function
probe
frmaTools
probe
frmaTools
updated 10.9 years ago by
Matthew McCall
▴ 830 • written 10.9 years ago by
Tae-Hoon Chung
▴ 70
0
votes
0
replies
1.0k
views
error when running makeVectorsAffyBatch
frmaTools
frmaTools
10.6 years ago
Loraine, Ann
▴ 50
0
votes
2
replies
913
views
HG-U219 vectors for fRMA?
frma
frmatools
updated 6.1 years ago by
Matthew McCall
▴ 830 • written 6.1 years ago by
skol
• 0
1
vote
3
replies
365
views
frma normalization
frmaTools
affy
updated 11 weeks ago by
James W. MacDonald
65k • written 11 weeks ago by
michelafrancesconi8
• 0
16 results • Page
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Comment: Cannot connect to ExperimentHub server
by
Jiayu
• 0
Many thanks and it also resolved the same issue for me!
Comment: Help with running egsea()
by
Chris
• 0
I tried egsea.ma and got this error: gsa = egsea.ma(numeric_matrix, vector_group, probe_annotation, contrasts = contrast_matrix, gs.an…
Comment: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
angelathuynh5
• 0
Thank you for your response. To clarify, the process of making a heatmap performs rowscaling so it takes the value - (mean/std). And to res…
Comment: Method to find pathways different between 2 groups
by
Gordon Smyth
50k
sigPathway is another method that does not account for inter-gene correlation and which gives inflated significance, as we showed in our 20…
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
James W. MacDonald
65k
I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?
Votes
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
Answer: confused with tximport counts abundance using salmon input
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
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