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gageData
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289
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How to use GAGE with my own metagenomic KOFams data
kegg.gsets
gageData
gage
KEGG
4 months ago
cereyredondo
• 0
0
votes
0
replies
952
views
Pathway Analysis using GAGE
gage
RNASeq
gageData
Pathways
2.6 years ago
OST
• 0
6
votes
5
replies
1.8k
views
KEGG analysis for plasmodium
KEGG
gage
gageData
pathview
updated 3.7 years ago by
Luo Weijun
★ 1.6k • written 3.7 years ago by
MOHAMMAD
• 0
0
votes
0
replies
773
views
Setting threshold with gage for gene set analysis
gage
gageData
3.7 years ago
jd348
• 0
1
vote
2
replies
1.3k
views
Can I create a gene set using GAGE?
gage
pathview
gageData
written 3.8 years ago by
Emilia
▴ 40
5 results • Page
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Comment: [How to construct a model.matrix ]
by
kyj2226
• 0
Thanks to you, I learn a lot. Many thanks, Yujin.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
thank you for your advice, I posted separate post.
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Votes
Answer: [How to construct a model.matrix ]
C: DESeq2 baseMean values for each sample
C: DESeq2 baseMean values for each sample
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
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prabin.dm
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Robert Castelo
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Michael Stadler
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ATpoint
★ 4.5k
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James W. MacDonald
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