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gagedata
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GAGE kegg.gsets() self-signed certificate error
gageData
gage
10 months ago
Lucas
• 0
0
votes
0
replies
629
views
How to use GAGE with my own metagenomic KOFams data
kegg.gsets
gageData
gage
KEGG
18 months ago
cereyredondo
• 0
0
votes
0
replies
1.2k
views
Pathway Analysis using GAGE
gage
RNASeq
gageData
Pathways
3.8 years ago
OST
• 0
6
votes
5
replies
2.4k
views
KEGG analysis for plasmodium
KEGG
gage
gageData
pathview
updated 4.8 years ago by
Luo Weijun
★ 1.6k • written 4.8 years ago by
MOHAMMAD
• 0
0
votes
0
replies
966
views
Setting threshold with gage for gene set analysis
gage
gageData
4.8 years ago
jd348
• 0
1
vote
2
replies
1.7k
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Can I create a gene set using GAGE?
gage
pathview
gageData
written 5.0 years ago by
Emilia
▴ 40
6 results • Page
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Comment: Quality control of shotgun metagenomics data
by
elonlilx54
• 0
If you are a fan of word guessing games like Wordle, then you definitely cannot ignore [Octordle][1] - a more challenging and attractive ex…
Answer: Incosistencies in buildSNNGraph() function
by
stephengriffin04
• 0
Thank you for shedding light on the inconsistencies in the `buildSNNGraph()` function. It's crucial for users to address these issues as th…
Answer: A problem occurs when running the monocle2
by
stephengriffin04
• 0
I totally feel you on the monocle2 issues! I had a similar run-in with unexpected errors last week that had me pulling my hair out. Did you…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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