Bioconductor Gagedata

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238

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kegg.gsets gageData gage KEGG

12 weeks ago cereyredondo • 0

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911

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gage RNASeq gageData Pathways

2.5 years ago OST • 0

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1.8k

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KEGG gage gageData pathview

updated 3.6 years ago by Luo Weijun ★ 1.6k • written 3.6 years ago by MOHAMMAD • 0

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750

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gage gageData

3.6 years ago jd348 • 0

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1.3k

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gage pathview gageData

written 3.7 years ago by Emilia ▴ 40

5 results • Page 1 of 1

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Answer: Annotation for EPICv2 by James W. MacDonald 67k

The CpG you point out is in the intronic region of SHANK2, so will not be in any of the locations you have in your barplot. ![enter ima…

Comment: WGCNA by Lluís Revilla Sancho ▴ 750

This is a question of a package outside Bioconductor, it would be best to ask to the maintainer. But i think he moved to industry and the w…

Comment: dmpFinder for other objects by James W. MacDonald 67k

Yes, but you should probably use M-values instead of betas (convert using `logit2`). However, `dmpFinder` is just a way to allow people to…

Comment: Highly DE genes but small count difference within conditions by Michael Love 42k

This last problem, I don't know how to help with, I think there's high variability here and not many degrees of freedom to overcome that

Answer: [DESeq2] Introduce a bias in DESeq2 by Michael Love 42k

This is often called an offset in statistical modeling. We have some support site posts about how to do this in DESeq2. Search for posts me…

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Answer: Highly DE genes but small count difference within conditions

Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet

Trying to use enrichGO

Answer: edgeR 4.2.1 compression bug: a minimally reproducible snippet

Answer: dmpFinder for other objects

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