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gagedata
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GAGE kegg.gsets() self-signed certificate error
gageData
gage
11 months ago
Lucas
• 0
0
votes
0
replies
652
views
How to use GAGE with my own metagenomic KOFams data
kegg.gsets
gageData
gage
KEGG
19 months ago
cereyredondo
• 0
0
votes
0
replies
1.2k
views
Pathway Analysis using GAGE
gage
RNASeq
gageData
Pathways
3.9 years ago
OST
• 0
6
votes
5
replies
2.5k
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KEGG analysis for plasmodium
KEGG
gage
gageData
pathview
updated 5.0 years ago by
Luo Weijun
★ 1.6k • written 5.0 years ago by
MOHAMMAD
• 0
0
votes
0
replies
986
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Setting threshold with gage for gene set analysis
gage
gageData
5.0 years ago
jd348
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1
vote
2
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1.8k
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Can I create a gene set using GAGE?
gage
pathview
gageData
written 5.1 years ago by
Emilia
▴ 40
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Answer: GSEA error
by
James W. MacDonald
68k
At a very high level, the way non-model organisms are annotated is by using blast to find orthologs in other species that are well annotate…
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Comment: Unable to find ENTREZ IDs
by
Adithi
• 0
Hi James, Thank you so much for your reply. My main goal is to find ortholog genes from chinese hamster gene symbols to mouse gene symbols…
Answer: Unable to find ENTREZ IDs
by
James W. MacDonald
68k
Those are the 'symbols', and are a concatenation of LOC and the NCBI Gene ID (what used to be called an Entrez Gene ID). As an example:http…
Answer: Inconsistencies between accessor functions for TxDb databases with selected seql
by
a2a2hd42aa
• 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Votes
Answer: OrgDb for maize
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
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