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gagedata
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How to use GAGE with my own metagenomic KOFams data
kegg.gsets
gageData
gage
KEGG
3 months ago
cereyredondo
• 0
0
votes
0
replies
946
views
Pathway Analysis using GAGE
gage
RNASeq
gageData
Pathways
2.6 years ago
OST
• 0
6
votes
5
replies
1.8k
views
KEGG analysis for plasmodium
KEGG
gage
gageData
pathview
updated 3.7 years ago by
Luo Weijun
★ 1.6k • written 3.7 years ago by
MOHAMMAD
• 0
0
votes
0
replies
769
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Setting threshold with gage for gene set analysis
gage
gageData
3.7 years ago
jd348
• 0
1
vote
2
replies
1.3k
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Can I create a gene set using GAGE?
gage
pathview
gageData
written 3.8 years ago by
Emilia
▴ 40
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Comment: Volcano plot has many values around zero
by
Michael Love
42k
It's positive over zero or nearly so.
Answer: Volcano plot has many values around zero
by
swbarnes2
★ 1.4k
You've got genes with supposedly have a 32-fold difference, and the adjusted p-values are < 1x10-10? That seems odd.
Comment: Volcano plot has many values around zero
by
mjun
• 0
Why this cluster close to 0 with low p value is so distinctive. Is this common? What does it mean and why? Thanks
Comment: Volcano plot has many values around zero
by
swbarnes2
★ 1.4k
I don't think this is evidence that the dataset is invalid. It's evidence that your experiment is underpowered, and/or your experimental c…
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Gordon Smyth
51k
Have you read the totalVI documentation?, which says: > **Important** > We do not recommend using totalVI denoised values in other differ…
Votes
Comment: Weird looking volcano plot
Volcano plot has many values around zero
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
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Dario Strbenac
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