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gcrma
•
reset
0
votes
0
replies
1.1k
views
Farms library
gcrma
PROcess
farms
gcrma
PROcess
farms
19.6 years ago
Phguardiol@aol.com
▴ 720
0
votes
2
replies
1.5k
views
median of the NUSE value
cdf
affy
gcrma
affyPLM
affyio
cdf
affy
gcrma
affyPLM
affyio
updated 19.6 years ago by
Ben Bolstad
★ 1.2k • written 19.6 years ago by
kfbargad@ehu.es
▴ 270
0
votes
2
replies
1.7k
views
Failure to install specific packages from Bioconductor on a Linux machine running R 2.3.1
affy
gcrma
matchprobes
affyPLM
affyio
affy
gcrma
matchprobes
affyPLM
affyio
updated 19.6 years ago by
zph@herald.ox.ac.uk
▴ 50 • written 19.6 years ago by
Michael Oldham
▴ 20
0
votes
2
replies
1.1k
views
unnormalised vs normalised distribution
gcrma
gcrma
updated 19.6 years ago by
Jenny Drnevich
★ 2.2k • written 19.6 years ago by
Benjamin Otto
▴ 830
0
votes
8
replies
2.5k
views
error message in gcrma
cdf
affy
gcrma
matchprobes
plier
cdf
affy
gcrma
matchprobes
plier
updated 19.6 years ago by
Seth Falcon
★ 7.4k • written 19.6 years ago by
Mohammad Esad-Djou
▴ 520
0
votes
0
replies
912
views
justGCRMA error in BioC 1.8
Microarray
cdf
affy
gcrma
matchprobes
Microarray
cdf
affy
gcrma
matchprobes
19.6 years ago
James W. MacDonald
68k
0
votes
0
replies
1.2k
views
Why mm's changing after bg.adjust.gcrma?
drosgenome1
cdf
Biobase
reposTools
affy
gcrma
affyPLM
simpleaffy
affyQCReport
affyio
cdf
19.7 years ago
Jenny Drnevich
★ 2.2k
0
votes
4
replies
2.4k
views
Failure to load Biobase
Biobase
affy
limma
gcrma
matchprobes
affyio
Biobase
affy
limma
gcrma
matchprobes
affyio
updated 19.7 years ago by
Martin Morgan
25k • written 19.7 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
1.1k
views
simpleAffy, custom chip error
GO
cdf
probe
gcrma
simpleaffy
affyQCReport
GO
cdf
probe
gcrma
simpleaffy
affyQCReport
19.7 years ago
Wittner, Ben
▴ 290
0
votes
0
replies
641
views
Bugfix in gcrma
Microarray
Cancer
gcrma
Microarray
Cancer
gcrma
19.7 years ago
James W. MacDonald
68k
0
votes
0
replies
862
views
justGCRMA error in BioC 1.8
cdf
affy
gcrma
matchprobes
cdf
affy
gcrma
matchprobes
19.7 years ago
echang4@life.uiuc.edu
▴ 110
0
votes
4
replies
1.4k
views
a just.gcrma question
gcrma
gcrma
updated 19.7 years ago by
Zhijin Jean Wu
▴ 200 • written 19.7 years ago by
Jianping Jin
▴ 890
0
votes
5
replies
1.7k
views
GCRMA Fold Change
probe
gcrma
PROcess
probe
gcrma
PROcess
updated 19.7 years ago by
Jenny Drnevich
★ 2.2k • written 19.7 years ago by
cap2018@columbia.edu
▴ 20
0
votes
3
replies
1.9k
views
error in mas5calls() for soybean chip
Survival
hu6800
cdf
probe
Biobase
genefilter
reposTools
affy
affydata
limma
gcrma
made4
updated 19.8 years ago by
Ken Simpson
▴ 70 • written 19.8 years ago by
Jenny Drnevich
★ 2.2k
0
votes
0
replies
966
views
A questions related to affymetrix chip normalizationfrom multiple platform
hgu133a
hgu133b
gcrma
hgu133a
hgu133b
gcrma
19.8 years ago
Li, Aiguo NIH/NCI
▴ 110
0
votes
2
replies
1.6k
views
AnnBuilder problem for mu11ksuba
Organism
mu11ksuba
annotate
limma
gcrma
matchprobes
annaffy
AnnBuilder
Organism
mu11ksuba
updated 19.8 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 19.8 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
884
views
Scaling Factor for Affymetrix chips
affy
gcrma
simpleaffy
affy
gcrma
simpleaffy
19.9 years ago
Jacky Pallas
▴ 10
0
votes
1
reply
979
views
Scaling Factor for Affymetrix chips.
affy
gcrma
affy
gcrma
updated 19.9 years ago by
Darlene Goldstein
▴ 230 • written 19.9 years ago by
Khan, Sohail
▴ 490
0
votes
0
replies
815
views
Fwd: Re: Scaling Factor for Affymetrix chips.
GO
probe
affy
gcrma
GO
probe
affy
gcrma
19.9 years ago
Naomi Altman
★ 6.0k
0
votes
8
replies
2.1k
views
Trouble building Bioconductor
gcrma
gcrma
19.9 years ago
Atro Tossavainen
▴ 160
0
votes
1
reply
1.2k
views
degraded RNA and background correction
Normalization
GO
gcrma
Normalization
GO
gcrma
19.9 years ago
Jenny Drnevich
★ 2.2k
0
votes
5
replies
1.8k
views
Problems annotating a gene list
Annotation
gcrma
Annotation
gcrma
updated 19.9 years ago by
Sean Davis
21k • written 19.9 years ago by
Quentin Anstee
▴ 110
0
votes
2
replies
1.5k
views
Filter on Fold Change
genefilter
affy
gcrma
genefilter
affy
gcrma
updated 19.9 years ago by
Stephen Henderson
★ 1.0k • written 19.9 years ago by
Quentin Anstee
▴ 110
0
votes
6
replies
2.1k
views
RNA degradation tends & options for analysis
affy
limma
gcrma
affycoretools
affy
limma
gcrma
affycoretools
updated 19.9 years ago by
James W. MacDonald
68k • written 19.9 years ago by
Juanma Vaquerizas
▴ 20
0
votes
2
replies
1.0k
views
GCRMA and background
probe
affy
gcrma
probe
affy
gcrma
updated 19.9 years ago by
James W. MacDonald
68k • written 19.9 years ago by
Amy Mikhail
▴ 460
0
votes
3
replies
1.3k
views
GCRMA explained in words
Cancer
probe
gcrma
Cancer
probe
gcrma
updated 20.0 years ago by
Zhijin Jean Wu
▴ 200 • written 20.0 years ago by
Richard Friedman
★ 2.0k
0
votes
3
replies
1.3k
views
mouse 430_2 error message
gcrma
gcrma
updated 20.0 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 20.0 years ago by
DMITRY GRIGORYEV
▴ 90
0
votes
3
replies
1.4k
views
ad hoc tools for affy tiling arrays?
Normalization
Preprocessing
gcrma
Normalization
Preprocessing
gcrma
updated 20.0 years ago by
Dario Greco
▴ 310 • written 20.0 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
0
replies
831
views
linear model vs. seperate normalization
limma
gcrma
limma
gcrma
20.0 years ago
Jianping Jin
▴ 890
0
votes
1
reply
859
views
ad hoc tools for affy tiling arrays?
Normalization
gcrma
Normalization
gcrma
updated 20.0 years ago by
Steffen Durinck
▴ 420 • written 20.0 years ago by
Dario Greco
▴ 310
0
votes
1
reply
1.4k
views
GCRMA
Microarray
Preprocessing
gcrma
BRAIN
Microarray
Preprocessing
gcrma
BRAIN
updated 20.0 years ago by
Richard Friedman
★ 2.0k • written 20.0 years ago by
cap2018@columbia.edu
▴ 20
0
votes
3
replies
975
views
comparing method
gcrma
gcrma
updated 20.0 years ago by
Naomi Altman
★ 6.0k • written 20.0 years ago by
Nate King
▴ 30
0
votes
0
replies
1.5k
views
double violation of normalization assumptions?
Microarray
Normalization
probe
limma
gcrma
Microarray
Normalization
probe
limma
gcrma
20.0 years ago
Matthew Hannah
▴ 940
0
votes
1
reply
1.7k
views
double violation of normalization assumptions?
Normalization
probe
limma
gcrma
Normalization
probe
limma
gcrma
updated 20.0 years ago by
Naomi Altman
★ 6.0k • written 20.0 years ago by
Jenny Drnevich
★ 2.2k
0
votes
1
reply
863
views
Memory issue on Linux running Affymetrix HG-U133_Plus_2
gcrma
gcrma
updated 20.0 years ago by
James W. MacDonald
68k • written 20.0 years ago by
DMITRY GRIGORYEV
▴ 90
0
votes
4
replies
1.7k
views
affy & problems with not enough avaliable memory
affy
gcrma
affy
gcrma
updated 20.0 years ago by
Benjamin Otto
▴ 830 • written 20.0 years ago by
Ettinger, Nicholas
▴ 110
0
votes
15
replies
3.0k
views
affy & problems with memory
affy
gcrma
affy
gcrma
updated 20.0 years ago by
Simon Lin
▴ 210 • written 20.0 years ago by
Ettinger, Nicholas
▴ 110
0
votes
1
reply
856
views
How to cite GCRMA and SAM for paper?
gcrma
gcrma
updated 20.0 years ago by
Zhijin Jean Wu
▴ 200 • written 20.0 years ago by
SAURIN
★ 1.1k
0
votes
0
replies
1.2k
views
RMA or GCRMA
gcrma
gcrma
20.0 years ago
Nate King
▴ 30
0
votes
1
reply
1.1k
views
GOstats/tkWidgets/gcrma conflict
tkWidgets
gcrma
matchprobes
GOstats
tkWidgets
gcrma
matchprobes
GOstats
updated 20.2 years ago by
Martin Morgan
25k • written 20.2 years ago by
mattia
▴ 80
0
votes
2
replies
929
views
GCRMA with custom chips
probe
gcrma
probe
gcrma
updated 20.2 years ago by
James W. MacDonald
68k • written 20.2 years ago by
Daniel Pick
▴ 50
0
votes
1
reply
686
views
gcrma and custom chips
GO
probe
gcrma
GO
probe
gcrma
updated 20.2 years ago by
James W. MacDonald
68k • written 20.2 years ago by
Daniel Pick
▴ 50
0
votes
0
replies
864
views
E. coli problems: bimodality and gcrma
probe
gcrma
probe
gcrma
20.2 years ago
Jenny Drnevich
★ 2.2k
0
votes
1
reply
707
views
bg.adjust.gcrma
cdf
affy
gcrma
cdf
affy
gcrma
updated 20.3 years ago by
James W. MacDonald
68k • written 20.3 years ago by
zhxiaoyu@ucla.edu
▴ 10
0
votes
0
replies
687
views
System configaration -Bioconductor for the best possible results (in terms of files processed)
gcrma
convert
gcrma
convert
20.3 years ago
Chaitanya Kommidi
▴ 30
0
votes
2
replies
1.6k
views
Matchprobe package
cdf
probe
gcrma
cdf
probe
gcrma
updated 20.4 years ago by
Wenqiong Chen
▴ 120 • written 20.4 years ago by
Wolfgang Huber
★ 13k
0
votes
2
replies
1.9k
views
gcRMA and normalization
Normalization
gcrma
Normalization
gcrma
updated 20.4 years ago by
Zhijin Jean Wu
▴ 200 • written 20.4 years ago by
claudio.is@libero.it
▴ 210
0
votes
1
reply
967
views
Problems with justGCRMA: Error in bg.adjust.fullmodel
vsn
gcrma
matchprobes
plier
vsn
gcrma
matchprobes
plier
updated 20.4 years ago by
James W. MacDonald
68k • written 20.4 years ago by
Jordi Altirriba Gutiérrez
▴ 350
0
votes
1
reply
2.5k
views
Removing batch effects
vsn
gcrma
vsn
gcrma
updated 20.4 years ago by
Arne.Muller@sanofi-aventis.com
▴ 210 • written 20.4 years ago by
Aedin Culhane
▴ 310
0
votes
2
replies
1.2k
views
GCRMA, identical normalized values from 3 replicates
affy
gcrma
affy
gcrma
updated 20.4 years ago by
Zhijin Jean Wu
▴ 200 • written 20.4 years ago by
Fangxin Hong
▴ 810
406 results • Page
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Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
Answer: When to use edgeR or limma
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