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genomes
•
reset
0
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0
replies
984
views
need output to contain probe x, y coordinates on array - AffyTiling
probe
PROcess
genomes
probe
PROcess
genomes
16.0 years ago
Ann Loraine
▴ 110
0
votes
0
replies
1.1k
views
Position for Computational Scientist at EMBL
Sequencing
Genetics
genomes
Sequencing
Genetics
genomes
16.0 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
1.4k
views
Ensembl mart release 56: Useful information
GO
Anopheles gambiae
Drosophila melanogaster
genomes
GO
Anopheles gambiae
genomes
16.2 years ago
Rhoda Kinsella
▴ 660
0
votes
1
reply
1.1k
views
about the annotate the new genome for geneplotter/genegraph
Annotation
genomes
Annotation
genomes
updated 16.4 years ago by
Michael Dondrup
▴ 140 • written 16.4 years ago by
zhuocheng Hou
▴ 10
0
votes
4
replies
2.0k
views
rtracklayer and UCSC
rtracklayer
genomes
rtracklayer
genomes
updated 16.6 years ago by
Michael Lawrence
▴ 620 • written 16.6 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
2
replies
915
views
comparing multiple individual genomes in bioc?
genomes
genomes
updated 16.9 years ago by
Kasper Daniel Hansen
★ 6.5k • written 16.9 years ago by
Paul Shannon
★ 1.1k
0
votes
1
reply
965
views
Reminder: Intermediate BioC Course 21-23 Jan 09
Sequencing
Microarray
genomes
Sequencing
Microarray
genomes
16.9 years ago
Patrick Aboyoun
★ 1.6k
0
votes
0
replies
1.1k
views
Intermediate BioC Course 21-23 Jan 09: Analyzing Microarray and Sequencing Experiments
Microarray
genomes
Microarray
genomes
17.0 years ago
Patrick Aboyoun
★ 1.6k
0
votes
1
reply
1.1k
views
New bosTau4 genome
BSgenome
BSgenome
genomes
BSgenome
BSgenome
genomes
updated 17.1 years ago by
João Fadista
▴ 500 • written 17.1 years ago by
Hervé Pagès
16k
0
votes
0
replies
1.4k
views
bioMart 1.6.3 missing mysql=TRUE in useMart
Microarray
Annotation
GO
annotate
affy
biomaRt
genomes
Microarray
Annotation
GO
annotate
19.2 years ago
mkeehan@lic.co.nz
▴ 10
0
votes
0
replies
1.2k
views
PhD Studentship: Spatiotemporal Organisation of Gene Expression
genomes
attract
genomes
attract
20.4 years ago
Jan T. Kim
▴ 70
0
votes
0
replies
1.6k
views
Re: Defining your own chromosome annotations
Microarray
geneplotter
limma
AnnBuilder
genomes
Microarray
geneplotter
limma
AnnBuilder
20.6 years ago
Palmer, Lance
▴ 30
0
votes
1
reply
1.2k
views
Defining your own chromosome annotations
geneplotter
genomes
geneplotter
genomes
updated 20.6 years ago by
Sean Davis
21k • written 20.6 years ago by
Palmer, Lance
▴ 30
0
votes
1
reply
3.1k
views
GenomeViz again : corrected link
Proteomics
genomes
Proteomics
genomes
updated 20.9 years ago by
A.J. Rossini
▴ 210 • written 20.9 years ago by
Rohit Ghai
▴ 80
0
votes
2
replies
1.2k
views
help on normalize only one species in two-species platform
Normalization
genomes
Normalization
genomes
updated 21.4 years ago by
lgautier@altern.org
▴ 950 • written 21.4 years ago by
zwang@hivresearch.org
▴ 10
115 results • Page
3 of 3
Recent ...
Replies
Comment: DECIPHER DesignProbes unable to design FISH-probes
by
Erik Wright
▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment
by
Michael Love
43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment
by
Michael Love
43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA
by
Gordon Smyth
53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR
by
James W. MacDonald
68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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