Bioconductor Genomes

Showing : genomes • reset

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984

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probe PROcess genomes probe PROcess genomes

16.0 years ago Ann Loraine ▴ 110

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1.1k

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Sequencing Genetics genomes Sequencing Genetics genomes

16.0 years ago Wolfgang Huber ★ 13k

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1.4k

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GO Anopheles gambiae Drosophila melanogaster genomes GO Anopheles gambiae genomes

16.2 years ago Rhoda Kinsella ▴ 660

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Annotation genomes Annotation genomes

updated 16.4 years ago by Michael Dondrup ▴ 140 • written 16.4 years ago by zhuocheng Hou ▴ 10

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rtracklayer genomes rtracklayer genomes

updated 16.6 years ago by Michael Lawrence ▴ 620 • written 16.6 years ago by Kasper Daniel Hansen ★ 6.5k

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915

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genomes genomes

updated 16.9 years ago by Kasper Daniel Hansen ★ 6.5k • written 16.9 years ago by Paul Shannon ★ 1.1k

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965

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Sequencing Microarray genomes Sequencing Microarray genomes

16.9 years ago Patrick Aboyoun ★ 1.6k

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Microarray genomes Microarray genomes

17.0 years ago Patrick Aboyoun ★ 1.6k

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1.1k

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BSgenome BSgenome genomes BSgenome BSgenome genomes

updated 17.1 years ago by João Fadista ▴ 500 • written 17.1 years ago by Hervé Pagès 16k

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1.4k

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Microarray Annotation GO annotate affy biomaRt genomes Microarray Annotation GO annotate

19.2 years ago mkeehan@lic.co.nz ▴ 10

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genomes attract genomes attract

20.4 years ago Jan T. Kim ▴ 70

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1.6k

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Microarray geneplotter limma AnnBuilder genomes Microarray geneplotter limma AnnBuilder

20.6 years ago Palmer, Lance ▴ 30

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1.2k

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geneplotter genomes geneplotter genomes

updated 20.6 years ago by Sean Davis 21k • written 20.6 years ago by Palmer, Lance ▴ 30

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Proteomics genomes Proteomics genomes

updated 20.9 years ago by A.J. Rossini ▴ 210 • written 20.9 years ago by Rohit Ghai ▴ 80

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Normalization genomes Normalization genomes

updated 21.4 years ago by lgautier@altern.org ▴ 950 • written 21.4 years ago by zwang@hivresearch.org ▴ 10

115 results • Page 3 of 3

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k