Bioconductor Genomic

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780

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genomic EpiDISH

updated 2.2 years ago by shijieczheng • 0 • written 2.2 years ago by bony.dekumar ▴ 10

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1.2k

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GenomicRanges Genomic

3.6 years ago Daniel Cameron ▴ 40

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5.5k

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genomic AnnotationHub GenomicRanges org.Hs.eg.db

4.3 years ago • updated 4.1 years ago rohitsatyam102 ▴ 20

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1.7k

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IRanges GenomicRanges

updated 4.3 years ago by James W. MacDonald 68k • written 4.3 years ago by kalamari • 0

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1.1k

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computational genomic big data bioinformatics Job

5.7 years ago jmaanaki • 0

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1.8k

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dnacopy dnaseq genomic cn.mops cnv

updated 6.7 years ago by Günter Klambauer ▴ 540 • written 6.7 years ago by Cased • 0

6 results • Page 1 of 1

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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0

I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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Popular Question to Lluís Revilla Sancho ▴ 760