Bioconductor Genomicdatacommons

Showing : genomicdatacommons • reset

votes

replies

3.9k

views

TCGAutils TCGAbiolinks GenomicDataCommons

updated 4.8 years ago by Marcel Ramos 690 • written 4.8 years ago by Dario Strbenac ★ 1.5k

votes

replies

1.2k

views

GenomicDataCommons

2.7 years ago xiaofeiwang18266 ▴ 50

votes

replies

1.1k

views

genomicdatacommons tcga gdc rest http

updated 5.3 years ago by Sean Davis 21k • written 5.3 years ago by mk ▴ 20

votes

replies

1.1k

views

TCGA GenomicDataCommons

updated 2.4 years ago by Robert Castelo ★ 3.3k • written 2.4 years ago by Hashirama ▴ 10

votes

385

views

manifest GDCdownload GenomicDataCommons

8 months ago xiaofeiwang198266 • 0

votes

803

views

TCGA GenomicDataCommons

3.1 years ago Ezgi ▴ 60

votes

499

views

TCGA GenomicDataCommons GDC

written 10 months ago by António Miguel de Jesus Domingues ▴ 490

votes

replies

2.2k

views

GenomicDataCommons R

updated 2.7 years ago by xiaofeiwang18266 ▴ 50 • written 4.2 years ago by gv ▴ 40

8 results • Page 1 of 1

Recent ...

Replies

Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0