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geoquery
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0
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replies
1.4k
views
Using limma to analyze GEO datasets/series from two-channel experiments
Microarray
limma
GEOquery
Microarray
limma
GEOquery
16.0 years ago
Gordon Smyth
53k
0
votes
0
replies
1.6k
views
Using limma to analyze GEO datasets/series from two-channel experiments
Microarray
limma
GEOquery
Microarray
limma
GEOquery
16.0 years ago
Ana Rodrigues
▴ 30
0
votes
1
reply
2.0k
views
Ftp Proxy Error in GEO query
GEOquery
GEOquery
updated 16.0 years ago by
Sean Davis
21k • written 16.0 years ago by
Sailu Yellaboina
▴ 30
0
votes
2
replies
2.1k
views
R: Re: Thank you and small question - R: R: How to use GEOquery to extract more than the default information from a GSE
Annotation
limma
siggenes
GEOquery
Annotation
limma
siggenes
GEOquery
updated 16.2 years ago by
Sean Davis
21k • written 16.2 years ago by
Manca Marco PATH
▴ 200
0
votes
1
reply
1.7k
views
Thank you and small question - R: R: How to use GEOquery to extract more than the default information from a GSE
Annotation
GEOquery
Annotation
GEOquery
updated 16.2 years ago by
Sean Davis
21k • written 16.2 years ago by
Manca Marco PATH
▴ 200
0
votes
1
reply
1.3k
views
Help request about GEOquery and GSE9820
GEOquery
GEOquery
updated 16.2 years ago by
Manca Marco PATH
▴ 200 • written 16.2 years ago by
Sean Davis
21k
0
votes
3
replies
3.4k
views
extracting phenotypic data from GEO (i.e. GSE8671)
GEOquery
GEOquery
updated 16.3 years ago by
Sean Davis
21k • written 16.3 years ago by
Andrew Yee
▴ 350
0
votes
6
replies
2.5k
views
GEOquery and parsing SOFT files
GEOquery
GEOquery
updated 16.3 years ago by
Wolfgang Huber
★ 13k • written 16.3 years ago by
Wacek Kusnierczyk
▴ 180
0
votes
0
replies
1.2k
views
Visulising KEGG pathways using KEGGSOAP - example code
Pathways
geneplotter
KEGGSOAP
biomaRt
GEOquery
Pathways
geneplotter
KEGGSOAP
biomaRt
16.4 years ago
michael watson IAH-C
★ 3.4k
0
votes
0
replies
2.2k
views
GEO metadata
Cancer
GEOquery
GEOmetadb
Cancer
GEOquery
GEOmetadb
16.5 years ago
Jack Zhu
▴ 170
0
votes
0
replies
793
views
In need of platform clarification for 2-color SMD arrays
GEOquery
GEOquery
16.9 years ago
Scott Ochsner
▴ 300
0
votes
4
replies
2.1k
views
GEOQuery - MAS5 normalized data
GEOquery
GEOquery
updated 16.9 years ago by
Francois Pepin
★ 1.3k • written 16.9 years ago by
Srinivas Iyyer
▴ 600
0
votes
3
replies
1.3k
views
GEOQuery - from a LOCAL SOFT file to an ExprSet object
convert
GEOquery
convert
GEOquery
updated 17.0 years ago by
Sean Davis
21k • written 17.0 years ago by
michael watson IAH-C
★ 3.4k
0
votes
1
reply
2.4k
views
Arguments to getGEO?
GEOquery
GEOquery
updated 17.0 years ago by
Sean Davis
21k • written 17.0 years ago by
Thomas Hampton
▴ 750
0
votes
0
replies
789
views
log error
GEOquery
GEOquery
17.0 years ago
hemant ritturaj
▴ 150
0
votes
1
reply
1.1k
views
GEOquery::parseGEO throws error reading file
GEOquery
GEOquery
updated 17.1 years ago by
Gad Abraham
▴ 110 • written 17.2 years ago by
Sean Davis
21k
0
votes
0
replies
1.1k
views
GEOquery::parseGEO throws error reading file
GEOquery
GEOquery
17.2 years ago
Gad Abraham
▴ 110
0
votes
3
replies
3.0k
views
Retrieving sequences from NCBI
GEOquery
GEOquery
updated 17.2 years ago by
Sean Davis
21k • written 17.2 years ago by
JUAN MIGUEL MARIN DIAZARAQUE
▴ 70
0
votes
1
reply
1.3k
views
GEOquery error importing GEO data with 'null' values
Genetics
GEOquery
Genetics
GEOquery
updated 17.2 years ago by
Sean Davis
21k • written 17.2 years ago by
Dreyfuss, Jonathan
▴ 10
0
votes
2
replies
1.3k
views
About ArrayExpress MAGE-TAB tools
Microarray
GEOquery
ArrayExpress
Microarray
GEOquery
ArrayExpress
updated 17.3 years ago by
audrey
▴ 280 • written 17.3 years ago by
li lilingdu
▴ 450
0
votes
0
replies
873
views
Importing sample annotation from ArrayExpress
GEOquery
ArrayExpress
GEOquery
ArrayExpress
17.3 years ago
Markus Schmidberger
▴ 380
0
votes
1
reply
1.4k
views
Error using GEOquery
GEOquery
GEOquery
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
Markus Schmidberger
▴ 380
0
votes
2
replies
1.3k
views
GEOquery package
GEOquery
GEOquery
updated 17.4 years ago by
Tony Chiang
▴ 570 • written 17.4 years ago by
Balko, Justin M
▴ 10
0
votes
0
replies
1.0k
views
Unable to use GEOquery
GEOquery
GEOquery
17.4 years ago
Juan C Oliveros Collazos
▴ 190
0
votes
1
reply
1.1k
views
Unable to use GEOquery (SOLVED)
GEOquery
GEOquery
updated 17.4 years ago by
Sean Davis
21k • written 17.4 years ago by
Juan C Oliveros Collazos
▴ 190
0
votes
1
reply
3.6k
views
Combining multiple GSE datasets
GEOquery
GEOquery
updated 17.7 years ago by
Christos Hatzis
▴ 110 • written 17.7 years ago by
LUIS F MENEZES
▴ 60
0
votes
2
replies
3.9k
views
failure in GDS2eSet() in package GEOquery
Microarray
OneChannel
TwoChannel
DataImport
bridge
GEOquery
Microarray
OneChannel
bridge
updated 17.9 years ago by
Sean Davis
21k • written 17.9 years ago by
Wittner, Ben
▴ 290
0
votes
3
replies
1.6k
views
GDS2eSet problems
Biobase
affy
convert
affyio
GEOquery
Biobase
affy
convert
affyio
GEOquery
18.1 years ago
Mcmahon, Wyatt
▴ 50
0
votes
4
replies
2.1k
views
GSE normalization
limma
GEOquery
limma
GEOquery
updated 18.3 years ago by
Weiwei Shi
★ 1.2k • written 18.3 years ago by
Steve Taylor
▴ 100
0
votes
2
replies
1.7k
views
GEOquery and different GPL: handle of GSE
gpls
GEOquery
gpls
GEOquery
18.6 years ago
claudio.is@libero.it
▴ 210
0
votes
3
replies
1.9k
views
getGEO
GEOquery
GEOquery
updated 18.9 years ago by
Sean Davis
21k • written 18.9 years ago by
Weiwei Shi
★ 1.2k
0
votes
1
reply
1.6k
views
GEOquery : 'cannot open URL'
GEOquery
GEOquery
updated 19.0 years ago by
Sean Davis
21k • written 19.0 years ago by
Chaitanya Acharya
▴ 10
0
votes
1
reply
946
views
parseGEO stack at first.entity <- findFirstEntity(con)
GEOquery
GEOquery
updated 19.0 years ago by
Sean Davis
21k • written 19.0 years ago by
rcaloger
▴ 500
0
votes
1
reply
949
views
GEOquery
GEOquery
GEOquery
updated 19.2 years ago by
Sean Davis
21k • written 19.2 years ago by
LUIS F MENEZES
▴ 60
2
votes
5
replies
2.1k
views
Error with GEOquery
GEOquery
GEOquery
updated 19.4 years ago by
Peter
▴ 170 • written 19.5 years ago by
Sharon Anbu
▴ 480
0
votes
0
replies
860
views
[OT, slightly] GEO URL changes
GEOquery
GEOquery
19.5 years ago
Sean Davis
21k
0
votes
1
reply
1.2k
views
GEOquery & GDS2eSet error
Annotation
Cancer
Breast
Biobase
affy
limma
AnnBuilder
GEOquery
Annotation
Cancer
Breast
updated 19.6 years ago by
Sean Davis
21k • written 19.6 years ago by
Morten
▴ 300
0
votes
2
replies
2.1k
views
GEOquery and GEO issues
hgu95a
hgu95av2
GEOquery
hgu95a
hgu95av2
GEOquery
19.7 years ago
Christian.Stratowa@vie.boehringer-ingel…
▴ 270
0
votes
3
replies
6.9k
views
GEOquery and different types of GPL annotation files
GEOquery
GEOquery
updated 19.7 years ago by
Sean Davis
21k • written 19.7 years ago by
Peter
▴ 170
0
votes
0
replies
750
views
geneName in GEOquery package
affy
GLAD
GEOquery
affy
GLAD
GEOquery
19.7 years ago
Sean Davis
21k
0
votes
4
replies
1.9k
views
GEOquery - was queryGEO fails on GDS files (GEO Datasets)
GEOquery
GEOquery
updated 19.7 years ago by
Ting-Yuan Liu FHCRC
▴ 780 • written 19.7 years ago by
Peter
▴ 170
241 results • Page
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Comment: DiffBind - question on the use of filtered or unfiltered input data
by
deltaexecutor4
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Comment: GO.db and others package Download failure
by
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68k
Also, you never need to use anything but `BiocManager::install` to install any package, which has the beneficial side effect of ensuring th…
Comment: GO.db and others package Download failure
by
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68k
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Comment: GO.db and others package Download failure
by
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Am I using Bioc-devel?
Comment: GO.db and others package Download failure
by
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68k
Is there a reason to use Bioc-devel? If not, you should be using the release version (which I am, and which installs `GO.db` without compla…
Votes
Comment: readDNAStringSet with non DNA characters
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Answer: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design
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Gordon Smyth
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Guangchuang Yu
★ 1.2k
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Paulito
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geneprophet
• 0
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Hervé Pagès
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