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Showing :
getgeo
•
reset
2
votes
6
replies
2.5k
views
error reading GSE using getGEO()
r
geo
getgeo
7.4 years ago
jaleh.amo
• 0
2
votes
2
replies
1.6k
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 7.7 years ago by
James W. MacDonald
68k • written 7.7 years ago by
dnedveck
• 0
3
votes
2
replies
4.8k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
7.7 years ago
rubi
▴ 110
3
votes
4
replies
1.7k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 7.8 years ago by
Sean Davis
21k • written 7.8 years ago by
umahajan
▴ 10
3
votes
11
replies
5.5k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 7.9 years ago by
Sean Davis
21k • written 8.6 years ago by
jblack29
• 0
3
votes
1
reply
1.4k
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 8.0 years ago by
James W. MacDonald
68k • written 8.0 years ago by
cg
▴ 10
0
votes
2
replies
2.2k
views
Error in GEOquery
geoquery
getgeo
R
updated 8.6 years ago by
James W. MacDonald
68k • written 8.6 years ago by
rk489
• 0
2
votes
2
replies
2.1k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 8.7 years ago by
Sean Davis
21k • written 8.7 years ago by
svlachavas
▴ 840
2
votes
2
replies
3.0k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
9.0 years ago
hzc363
▴ 20
0
votes
2
replies
2.6k
views
Why getGEO returns an expressionset with zero features ?
getgeo
9.7 years ago
xishan78
• 0
0
votes
0
replies
1.2k
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
9.7 years ago
alptaciroglu
▴ 50
0
votes
1
reply
4.5k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
9.8 years ago
maedakus
▴ 10
2
votes
4
replies
2.1k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
9.9 years ago
rfb
• 0
2
votes
2
replies
2.2k
views
getGEO error
getgeo
geoquery
updated 9.9 years ago by
Gordon Smyth
53k • written 9.9 years ago by
maedakus
▴ 10
4
votes
8
replies
8.3k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
10.1 years ago
alptaciroglu
▴ 50
2
votes
4
replies
3.9k
views
getGEO function not identifying local file
geoquery
getGEO
10.2 years ago
Prasanth
▴ 20
16 results • Page
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Comment: Question about DESeq2 Design for Paired Treatment Study
by
ATpoint
★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR
by
efoss
▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma
by
Gordon Smyth
53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
• 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
• 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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