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getgeo
•
reset
4
votes
8
replies
6.9k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
8.5 years ago
alptaciroglu
▴ 50
3
votes
4
replies
1.3k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
umahajan
▴ 10
3
votes
1
reply
1.2k
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
cg
▴ 10
3
votes
2
replies
3.1k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
6.1 years ago
rubi
▴ 110
3
votes
11
replies
4.0k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 6.3 years ago by
Sean Davis
21k • written 7.1 years ago by
jblack29
• 0
2
votes
6
replies
1.5k
views
error reading GSE using getGEO()
r
geo
getgeo
5.8 years ago
jaleh.amo
• 0
2
votes
2
replies
1.8k
views
getGEO error
getgeo
geoquery
updated 8.3 years ago by
Gordon Smyth
50k • written 8.3 years ago by
maedakus
▴ 10
2
votes
4
replies
1.6k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
8.3 years ago
rfb
• 0
2
votes
2
replies
2.1k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
7.4 years ago
hzc363
▴ 20
2
votes
2
replies
1.6k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 7.1 years ago by
Sean Davis
21k • written 7.1 years ago by
svlachavas
▴ 830
2
votes
2
replies
1.2k
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
dnedveck
• 0
2
votes
4
replies
2.8k
views
getGEO function not identifying local file
geoquery
getGEO
8.6 years ago
Prasanth
▴ 20
0
votes
0
replies
953
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
8.2 years ago
alptaciroglu
▴ 50
0
votes
1
reply
3.6k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
8.2 years ago
maedakus
▴ 10
0
votes
2
replies
1.7k
views
Error in GEOquery
geoquery
getgeo
R
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
rk489
• 0
0
votes
2
replies
2.0k
views
Why getGEO returns an expressionset with zero features ?
getgeo
8.1 years ago
xishan78
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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