Bioconductor Glmfit

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edger edger main and interaction effects glmfit

updated 7.4 years ago by Aaron Lun ★ 29k • written 7.4 years ago by D ▴ 10

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edger rnaseq glm glmfit

updated 9.3 years ago by Aaron Lun ★ 29k • written 9.3 years ago by alessia.donato • 0

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edger standard error glmfit

9.4 years ago david.hughes • 0

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edger glmfit glmlrt()

updated 10.0 years ago by Aaron Lun ★ 29k • written 10.0 years ago by cadeans • 0

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Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

we can investigate this issue. thank you for bringing it to our attention

Comment: deseq2 filter the low counts by Michael Love 43k

> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…

Comment: deseq2 filter the low counts by empty_mt • 0

Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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