Bioconductor Glmfit

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edger edger main and interaction effects glmfit

updated 7.4 years ago by Aaron Lun ★ 29k • written 7.4 years ago by D ▴ 10

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edger rnaseq glm glmfit

updated 9.3 years ago by Aaron Lun ★ 29k • written 9.3 years ago by alessia.donato • 0

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edger standard error glmfit

9.4 years ago david.hughes • 0

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edger glmfit glmlrt()

updated 10.0 years ago by Aaron Lun ★ 29k • written 10.0 years ago by cadeans • 0

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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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