Showing : glmfit • reset
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EdgeR - How to set up the design matrix for a multifactorial experimental design with interactions?
edger edger main and interaction effects glmfit
updated 3.1 years ago by ★ 27k • written 3.1 years ago by • 0
2
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2.9k
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edgeR: exactTest, glmFIt or glmQLFit approach?
edger rnaseq glm glmfit
updated 5.0 years ago by ★ 27k • written 5.0 years ago by • 0
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Standard errors of fitted values from glmFit in edgeR
edger standard error glmfit
5.1 years ago david.hughes • 0
7
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5
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2.2k
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edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 5.7 years ago by ★ 27k • written 5.7 years ago by • 0
4 results • Page 1 of 1
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Comment: Best practice for quantifying sncRNA by Abhishek • 0
k has to be odd - trying 9, 21 instead
Comment: Best practice for quantifying sncRNA by Abhishek • 0
I did use the genome as decoy. And I used whole transcriptome from Gencode for indexing. Maybe I should index using just non coding transc…
Comment: Best practice for quantifying sncRNA by Abhishek • 0
Thank you for your suggestions. Throwing away larger reads sounds true, I'll try using Cutadapt for that besides adapter trimming. I did …
Comment: Best practice for quantifying sncRNA by Abhishek • 0
Thanks, I will try out Bowtie. Is GeneGlobe and Qiagen the same company ? https://www.qiagen.com/us/resources/download.aspx?id=bea2dcfa-…
Answer: Using both spike in and TMM normalizations in ChIP-seq samples by Gordon Smyth 43k
It is impossible to use both spike-in or TMM normalization. You must do one or the other. They replace each other, they cannot be combined.…
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Comment: Idea: Using DESeq2 to test a change in ratio of two genes
Time Series Analysis
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Comment: Time series DE gene analysis with edgeR where specific timepoints have NA levels
Answer: Time series DE gene analysis with edgeR where specific timepoints have NA levels
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