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glmfit
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EdgeR - How to set up the design matrix for a multifactorial experimental design with interactions?
edger
edger main and interaction effects
glmfit
updated 4.2 years ago by
Aaron Lun
★ 27k • written 4.2 years ago by
D
• 0
2
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1
reply
3.6k
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edgeR: exactTest, glmFIt or glmQLFit approach?
edger
rnaseq
glm
glmfit
updated 6.1 years ago by
Aaron Lun
★ 27k • written 6.1 years ago by
alessia.donato
• 0
0
votes
3
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1.4k
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Standard errors of fitted values from glmFit in edgeR
edger
standard error
glmfit
6.1 years ago
david.hughes
• 0
7
votes
5
replies
2.8k
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edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 6.8 years ago by
Aaron Lun
★ 27k • written 6.8 years ago by
cadeans
• 0
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Comment: DESeq2 LFC changes sign after adjusting for surrogates
by
Marie
• 0
Thanks a lot!
Comment: how to use Rsamtools to parse extra fields from STAR alignment
by
Jiping Wang
▴ 90
Thanks so much! That's exactly the solution I am looking for.
Comment: Mapping genome regions to gene symbols
by
michaelwegert
• 0
function > elementLengths() was deprecated in S4Vectors version update 0.16.0 (in 2016?). \ So I used: > elementNROWS() [https://web.m…
Comment: OPLS-DA: confidence interval for accuracy metric
by
etienne.thevenot
▴ 20
- The bootstrapping approach can be used to compute the CIs: see here for an example: Mendez et al. (2019). « A comparative evaluation …
Comment: Data input for aracne2regulon function in viper package
by
xlal
• 0
You are right!And may be we should check the gene symbols cause when I open the expression matrix in EXCEL,it will change some genes into m…
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Answer: error running UniProt.ws
error running UniProt.ws
Comment: DEXSeq: Error in reading counts from htseq "Error in FUN(X[[i]], ...) : subscrip
how to use Rsamtools to parse extra fields from STAR alignment
Comment: how to use Rsamtools to parse extra fields from STAR alignment
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