Bioconductor Standard error

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1.0k

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deseq2 log2fc standard error timecourse

updated 5.6 years ago by ellascottgm • 0 • written 5.6 years ago by Verena • 0

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15k

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deseq2 deseq lfc lfcse standard error

updated 6.5 years ago by rraadd_8 • 0 • written 6.5 years ago by tootiki • 0

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2.3k

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metagenomeseq logfc paired samples standard error

updated 14 months ago by tom830979 • 0 • written 7.0 years ago by manasishah86 ▴ 30

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1.7k

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edger standard error glmfit

7.2 years ago david.hughes • 0

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2.0k

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limma standard error

7.3 years ago José Luis Lavín ▴ 10

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8.9k

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rnaseq deseq2 deseq standard error confidence interval

updated 22 months ago by Michael Love 40k • written 7.4 years ago by lisa.crossman ▴ 10

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6.7k

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effect size Limma toptable Standard Error

updated 8.2 years ago by Gordon Smyth 48k • written 8.2 years ago by Vani ▴ 20

7 results • Page 1 of 1

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Answer: ukb Chromosomal position information was converted into SNPS by James W. MacDonald 63k

In my work, we almost always convert RSIDs to chr:pos because the former is ambiguous and changing whereas the latter is not. Which is like…

Comment: T.fit function of maSigPro returns error message by hanna.g • 0

Addition to the issue above: the T.fit function works only when choosing the step.method = "forward", for whatever reason. Maybe this clue …

Answer: Deseq2, enrichGO and ensembl ID by James W. MacDonald 63k

1. There isn't a keytype alternative. You need the gene IDs. 2. Convert the `rownames` of your 'se' object, or the `rownames` of your `D…

Comment: Doubts regarding Pathview by loyedbend2811 • 0

I thoroughly enjoyed reading your essay, and it was quite beneficial to me. Please join me in [monopoly online][1] if you have the time. …

Comment: ukb Chromosomal position information was converted into SNPS by wenbo • 0

Hi, I downloaded uk biobank data, but I don't know how to use R to convert chromosome position information to rs

Votes

Answer: MDS plot edgeR

A: legend with gradient in ComplexHeatmap

Comment: comparing contrasts in edger/lima using makeContrasts function

Answer: comparing contrasts in edger/lima using makeContrasts function

Answer: Differential expression analysis with only FPKM matrix available from total newb

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