Bioconductor Glmnet

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2.9k

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glmnet cox LOOCV k-fold cross validation

updated 6.4 years ago by chris86 ▴ 420 • written 6.4 years ago by Talip ▴ 10

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4.9k

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tcga rnaseq glmnet voom deseq2

8.9 years ago panagiotis.mokos ▴ 40

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3.1k

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rnaseq glmnet limma voom deseq2

8.9 years ago panagiotis.mokos ▴ 40

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3.3k

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glmnet deseq2

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by panagiotis.mokos ▴ 40

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2.6k

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adaptive-lasso snv biomarkers cv glmnet

9.1 years ago crichard • 0

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Answer: Are individual-mouse-based statistics possible in CellChat? by ATpoint ★ 5.0k

Not a Bioconductor package, I commented on the crosspost at https://www.biostars.org/p/9617271/

Comment: DESeq2 - how to shrink LFC for pairwise comparisons having multiple groups by ATpoint ★ 5.0k

apeglm is more cumbersome than ashr as with apeglm the coefficients need to be explicitely available in the resultsNames.So, you need to re…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Martin Morgan 25k

I see rstudioapi in the `sessionInfo()`. RStudio does not support forked ('multicore') processes. Does the BiocParallel example work when y…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

Given that this is an issue with BiocParallel on your machine and we have a minimal reproducible example, you may want to repost the issue.…

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Benjamin • 0

Still happening using pre-existing size factors estimating dispersions gene-wise dispersion estimates: 15 workers mean-dis…

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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