Bioconductor Glmnet

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glmnet cox LOOCV k-fold cross validation

updated 5.3 years ago by chris86 ▴ 420 • written 5.3 years ago by Talip ▴ 10

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tcga rnaseq glmnet voom deseq2

7.8 years ago panagiotis.mokos ▴ 40

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rnaseq glmnet limma voom deseq2

7.8 years ago panagiotis.mokos ▴ 40

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glmnet deseq2

updated 7.8 years ago by Michael Love 43k • written 7.8 years ago by panagiotis.mokos ▴ 40

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adaptive-lasso snv biomarkers cv glmnet

8.1 years ago crichard • 0

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Comment: PCA of different bacterial species by Jeremy • 0

Your approach of using ~2500 single-copy orthologs and normalizing with VST or rlog for PCA is valid for exploring general clustering [pap…

Comment: RnBeads::combine() - error? by Urotree • 0

pheno <- rnb.set.arrays@pheno # Phenotypic data sites <- rnb.set.arrays@sites # CpG site definitions (data.frame) meth <- rnb.set…

Comment: RnBeads::combine() - error? by Urotree • 0

![enter image description here][1] [1]: /media/images/40d9778d-b044-4405-9b3d-2ba835f6 Hi, after I convert to RnBiseqSet, it shows "All…

Comment: RnBeads::combine() - error? by Urotree • 0

rnb.set.biseq <- RnBiseqSet( pheno = pheno, sites = sites, meth = meth, covg = NULL, # This can be NULL if coverage …

Answer: How to increase font for gene name and increase arrow size for GVIZ's ( UcscTra by ming • 0

`fontsize` for title font size, `fontsize.group` for gene symbol font size tx.track <- GeneRegionTrack(hg38.gtf, …

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scater/scran with TPMs from Salmon - counts?

A: Full length single-cell RNA-seq - tximport output for downstream analysis

Answer: Understanding tximport working with salmon outputs

Answer: enrichGOgradient color change

How do I fix an odd voom plot in a combined dataset?

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Popular Question to gingergeiger22 • 0