Bioconductor Glmnet

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2.9k

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glmnet cox LOOCV k-fold cross validation

updated 6.4 years ago by chris86 ▴ 420 • written 6.4 years ago by Talip ▴ 10

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4.9k

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tcga rnaseq glmnet voom deseq2

8.9 years ago panagiotis.mokos ▴ 40

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3.1k

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rnaseq glmnet limma voom deseq2

8.9 years ago panagiotis.mokos ▴ 40

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3.3k

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glmnet deseq2

updated 8.9 years ago by Michael Love 43k • written 8.9 years ago by panagiotis.mokos ▴ 40

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2.6k

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adaptive-lasso snv biomarkers cv glmnet

9.1 years ago crichard • 0

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Comment: chemmineOB install help by Jeremy • 0

I could install ChemmineOB on my MacBook Pro M1 Max using this procedure **1. Install open-babel and eigen using homebrew and create a cus…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

The design matrix that I described above is completely general. I imagine that it would be possible to use the same approach to generate fu…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

Cool, glad to hear I wasn't missing some functionality in DESeq2. I don't know that much about the differences between DESeq2 vs edgeR; my …

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Michael Love 43k

Yes, so for one thing, note that Gordon has provided code for doing what you are asking in edgeR, which you can go ahead and use. You aske…

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by chp265 • 0

I don't think DESeq2 has the ability to do multi-contrast comparisons, at least based on what I can understand of the manual; I can pick mu…

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Comment: limpa analysis advice

Answer: When to use edgeR or limma

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