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glmnet
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Which one is more trustable for Cox Proportional Hazard Model with Lasso penalty? LOOCV or K-fold cross-validation?
glmnet
cox
LOOCV
k-fold
cross validation
updated 6.3 years ago by
chris86
▴ 420 • written 6.3 years ago by
Talip
▴ 10
3
votes
12
replies
4.8k
views
Problem about use of TCGA rna-seq rsem gene results for regularized cox regression modeling
tcga
rnaseq
glmnet
voom
deseq2
8.8 years ago
panagiotis.mokos
▴ 40
0
votes
4
replies
3.0k
views
Normalization and transformation of RNA-seq raw data for regularized linear regression models
rnaseq
glmnet
limma
voom
deseq2
8.8 years ago
panagiotis.mokos
▴ 40
4
votes
4
replies
3.3k
views
ABOUT TRANSFORMATION OF RNA-SEQ DATA FOR GLMNET COX SURVIVAL ANALYSIS
glmnet
deseq2
updated 8.8 years ago by
Michael Love
43k • written 8.8 years ago by
panagiotis.mokos
▴ 40
0
votes
1
reply
2.5k
views
Adaptive Lasso and CrossValidation for SNV selection
adaptive-lasso
snv
biomarkers
cv
glmnet
9.0 years ago
crichard
• 0
5 results • Page
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• 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital
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• 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
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TikTsokaasocissalpc
• 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers
by
Gordon Smyth
53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long?
by
ATpoint
★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
Votes
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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