Showing : graphviz • reset
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[SOLVED] Problem with the installation of Rgraphviz
Graphviz Rgraphviz
4.1 years ago c.bell.lu • 0
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Pathview: Exporting non native KEGG pathway to PNG
pathview bioconductor graphics graphviz Pathview
updated 9.3 years ago by ▴ 10 • written 9.4 years ago by ▴ 30
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Pathview: Exporting non native KEGG pathway ignoring same.layer argument
Pathview rgraphviz graphviz KEGG
updated 9.4 years ago by ★ 1.6k • written 9.4 years ago by ▴ 30
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Read Graphviz file .dot in R
r rstudio rgraphviz graphviz .dot
9.6 years ago pleaseteachmehowtodoit • 0
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1.7k
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embed url in pathview images
pathview r pdf kegg graphviz
updated 10.1 years ago by ★ 1.6k • written 10.1 years ago by • 0
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5
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Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 10.2 years ago by ★ 1.6k • written 10.2 years ago by ▴ 840
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Rgraphviz: nodes with multiple colors
rgraphviz graphviz R
10.6 years ago oliverfrings • 0
7 results • Page 1 of 1
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Answer: When to use edgeR or limma by James W. MacDonald 68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry by Gordon Smyth 53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR by mohammedtoufiq91 ▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry by JKim • 0
Hi Emily, He left some comments regarding normalization. Here is the relevant quote: > The EList object produced by dpcQuant(), containi…
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A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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