Bioconductor Graphviz

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Graphviz Rgraphviz

18 months ago c.bell.lu • 0

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pathview bioconductor graphics graphviz Pathview

updated 6.7 years ago by dondelelcaro ▴ 10 • written 6.8 years ago by guillermo.marco ▴ 30

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Pathview rgraphviz graphviz KEGG

updated 6.8 years ago by Luo Weijun ★ 1.6k • written 6.8 years ago by guillermo.marco ▴ 30

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r rstudio rgraphviz graphviz .dot

7.0 years ago pleaseteachmehowtodoit • 0

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pathview r pdf kegg graphviz

updated 7.5 years ago by Luo Weijun ★ 1.6k • written 7.5 years ago by firstdayonthejob2003 • 0

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pathview clusterProfiler KEGGpath visualization Graphviz

updated 7.6 years ago by Luo Weijun ★ 1.6k • written 7.6 years ago by svlachavas ▴ 810

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rgraphviz graphviz R

8.0 years ago oliverfrings • 0

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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10

First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…

Comment: Diffbind "No genome detected" by kyliecode • 0

Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…

Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k

I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…

Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170

I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!

Answer: error in ChAMP loading file by jenniferbrowngates • 0

I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …

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Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)

Comment: Error: biomaRt has encountered an unexpected server error.

Comment: Interpret plot from DiffBind

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Scholar to Tiago C. Silva ▴ 270