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gseKEGG
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generating an order ranked gene list
gseKEGG
order ranked gene list
order rank
6.8 years ago
bruno.saubamea
• 0
0
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0
replies
1.2k
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enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot
clusterProfiler
enrichKEGG
gseKEGG
5.3 years ago
yurigorelik
▴ 10
2
votes
2
replies
222
views
How many of my genes from my gene list are in each KEGG pathway?
Pathways
clusterProfiler
gseKEGG
KEGG
5 weeks ago
julia_mcdonough
• 0
0
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0
replies
165
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Why output of GSEA is not the same but inversed, when you have the same but inversed input data?
clusterProfiler
gseKEGG
6 weeks ago
andromeda
• 0
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Comment: pathview error
by
Guido Hooiveld
★ 4.0k
> Will removing the NA values help solve the problem? Did you try? And, FWIW, in the cases I had ensembl-based RNA-seq datasets removed a…
Comment: pathview error
by
Fara
• 0
Thank you for the reply. I already conducted the KEGG enrichment analysis and I got the pathway ID. So there is no doubt it cannot be map…
Comment: Not able to install any Bioconductor 3.18 package [unable to access index]
by
bravaccinimirea
• 0
I am experiencing the same problem, I tried with all the advices I found in similar posts but nothing seems to work
Comment: can't open mghp.osn.xsede.org
by
merv
▴ 120
Seeing this issue today, now with the R 4.3 + Bioc 3.18 version of this package. It is the Bioconductor servers that redirect to this unrel…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf
by
Brandon
▴ 20
I did try again...*repeatedly*...I even tried it on a VM. Thankfully I got it to work on the VM. I still can't get it to work on windows t…
Votes
can't open mghp.osn.xsede.org
Answer: can't open mghp.osn.xsede.org
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Help with infinite recursion - non-zero exit status in installation of GenomeInfoDbData
Comment: recount3 problem downloading data from source sra
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