Bioconductor Gviz

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DMRcate Gviz

updated 25 days ago by Tim Peters ▴ 180 • written 14 months ago by jose.ramirez1 ▴ 10

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Gviz

updated 3 months ago by James W. MacDonald 65k • written 3 months ago by ilaria.maurizio • 0

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DMR Methylation R Gviz

updated 6 months ago by Robert Ivanek ▴ 730 • written 3.0 years ago by ltzhou • 0

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Gviz

6 months ago dbsgtk • 0

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rtracklayer Gviz

updated 6 months ago by Hervé Pagès 16k • written 6 months ago by yujin ▴ 10

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rtracklayer UCSC Gviz

6 months ago yujin ▴ 10

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Gviz coMET

17 months ago • updated 7 months ago Daniel E. Weeks ▴ 30

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gviz Saccharomyces_cerevisiae Gviz ideogram

updated 8 months ago by Robert Ivanek ▴ 730 • written 8 months ago by Michael • 0

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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k

Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.

Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k

Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…

Comment: Ensembl plants at annotationHub? by Daniele • 0

Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!

Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k

If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?

Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0

The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…

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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")

Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools

Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa

Rsubread counting peaks ATACseq

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Popular Question to Vincent J. Carey, Jr. 6.7k

Popular Question to Koen Van den Berge ▴ 180