Bioconductor Gviz

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DMR Methylation R Gviz

updated 6 months ago by Robert Ivanek ▴ 730 • written 3.1 years ago by ltzhou • 0

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rtracklayer Gviz

updated 6 months ago by Hervé Pagès 16k • written 6 months ago by yujin ▴ 10

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Gviz coMET

17 months ago • updated 7 months ago Daniel E. Weeks ▴ 30

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DMRcate Gviz

updated 4 weeks ago by Tim Peters ▴ 180 • written 15 months ago by jose.ramirez1 ▴ 10

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Gviz

updated 3 months ago by James W. MacDonald 66k • written 3 months ago by ilaria.maurizio • 0

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804

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gviz Saccharomyces_cerevisiae Gviz ideogram

updated 8 months ago by Robert Ivanek ▴ 730 • written 8 months ago by Michael • 0

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381

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Gviz

6 months ago dbsgtk • 0

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469

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rtracklayer UCSC Gviz

6 months ago yujin ▴ 10

8 results • Page 1 of 1

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Comment: conumee with Infinium MethylationEPIC v2.0 by Maximus • 0

Hi Sole, If there is a combined mixture of MSet of 450K, EPIC and EPICv2, how should I create an annotation object? I tried to create anno…

Comment: Volcano plot of scRNA-seq data not "centered" by tjl • 0

Thank you both. The code is below, simplified a bit for simplicity. ATpoint, your suggestion re: the top 20% of genes by baseMean makes me …

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

Wait a minute. The `oligo` package is *supposed to* be using `zlibbioc`, but apparently it is not. I get the same thing as you do, where it…

Comment: Cannot install oligo on Fedora by James W. MacDonald 66k

There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…

Answer: GSVA function by Robert Castelo ★ 3.3k

Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …

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DESeq2 swap ensembl gene id rownames with gene symbol column

A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge

DESeq2: add annotations (from data frame) to DESeqDataSet

Add new columns to DESeqResults from text file by matching rownames.

DESeq2: LRT or WALD guidance

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Popular Question to Robert Castelo ★ 3.3k