Bioconductor Gzip

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zip gzip

2.6 years ago ksci ▴ 20

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files gzip

4.8 years ago psschlogl • 0

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limma illuminaio idat gzip

updated 7.5 years ago by Matthew Ritchie ▴ 1000 • written 7.5 years ago by Guido Hooiveld ★ 4.1k

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bsgenome gzip fasta

updated 8.6 years ago by Jeff Johnston ▴ 90 • written 8.6 years ago by TimothéeFlutre ▴ 80

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Comment: DESeq2 rerun returns different results by ATpoint ★ 4.5k

DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…

Answer: [How to construct a model.matrix ] by Gordon Smyth 51k

> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…

Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0

Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…

Comment: Merge Replicates vs Mixed Model by abadgerw • 0

@gabrielhoffman any insight?

Comment: makeContrastsDream for Interaction by abadgerw • 0

@gabrielhoffman any insight?

Votes

A: Some questions for remove batch effect by using mnnCorrect

A: Recommendations for combining multiple 10x runs into one SingleCellExperiment

Answer: [How to construct a model.matrix ]

Answer: Handling biological replicates in DESeq2

Comment: biomaRt rnorvegicus_gene_ensembl not available anymore

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Scholar to ATpoint ★ 4.5k

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