Bioconductor Heatplus

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heatmap.2 pheatmap complexheatmap heatplus

updated 8.1 years ago by Gavin Kelly ▴ 690 • written 8.1 years ago by Bogdan ▴ 670

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heatmap heatplus

9.1 years ago Bernal-Mizrachi, Leon ▴ 50

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Heatplus Heatplus

updated 11.9 years ago by Dan Tenenbaum ★ 8.2k • written 11.9 years ago by Adriana Munoz ▴ 100

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Heatplus Heatplus

updated 12.1 years ago by Alexander Ploner ▴ 10 • written 12.1 years ago by Guest User ★ 13k

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Heatplus Heatplus

12.3 years ago Hoyles, Lesley ▴ 50

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Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus

16.6 years ago lgautier@altern.org ▴ 950

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Annotation GO yeast2 cdf Heatplus Annotation GO yeast2 cdf Heatplus

16.7 years ago Hui-Yi Chu ▴ 160

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Microarray Cancer Heatplus Microarray Cancer Heatplus

17.0 years ago Gregory Warnes ▴ 50

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Heatplus Heatplus

updated 17.0 years ago by James W. MacDonald 68k • written 17.0 years ago by s.khalid@qmul.ac.uk ▴ 50

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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