Showing : hgug4112a • reset
3
votes
9
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2.4k
views
Annotation problem while quering hgug4112a.db with function select and duplicates for agilent microarray dataset
limma annotation agilent hgug4112a microarray
8.3 years ago Konstantinos Yeles ▴ 80
0
votes
0
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1.1k
views
virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
9.7 years ago Guest User ★ 13k
0
votes
0
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8.8k
views
virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
9.9 years ago Guest User ★ 13k
0
votes
1
reply
921
views
hgug4845a.db - error in the lookUp function when running genes.rpt.agi
Annotation hgug4112a Annotation hgug4112a
updated 10.6 years ago by 65k • written 10.6 years ago by ▴ 10
0
votes
0
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1.3k
views
Quantiles from virtualArray example without batcheffect removal are all the same
Microarray BatchEffect hgu133plus2 hgug4112a virtualArray Microarray BatchEffect hgug4112a
11.1 years ago Daniel Emden ▴ 10
0
votes
0
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1.1k
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Mapping genes to their gene sets for GSEA
Microarray Genetics GO hgu95av2 hgug4112a Microarray Genetics GO hgu95av2 hgug4112a
11.9 years ago Yoo, Seungyeul ▴ 110
0
votes
1
reply
817
views
How to create annotation package for not a supported organism
Annotation GO Organism hgug4112a Annotation GO Organism hgug4112a
updated 12.7 years ago by ★ 6.8k • written 12.7 years ago by ▴ 90
0
votes
0
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998
views
FW: normalization one color microarrays
Normalization hgug4112a PROcess Agi4x44PreProcess Normalization hgug4112a PROcess
12.7 years ago Paz Tapia Ramirez ▴ 150
0
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1
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1.2k
views
Agi4x44PreProcess: INPUT DATA DOES NOT CONTAIN - Sequence and chr_coord SCANN THE DATA USING AFE 9.5.3.1 Error in read.AgilentFE(targets, makePLOT = …
hgug4112a Agi4x44PreProcess hgug4112a Agi4x44PreProcess
updated 13.8 years ago by ▴ 460 • written 13.8 years ago by ▴ 20
0
votes
1
reply
880
views
Problem with createAnnObjs.HUMANCHIP_DB
hgug4112a RmiR hgug4112a RmiR
updated 14.0 years ago by 25k • written 14.0 years ago by ▴ 10
0
votes
2
replies
964
views
Agilent annotation source
Annotation hgug4112a oligo Annotation hgug4112a oligo
updated 14.3 years ago by 65k • written 14.3 years ago by ★ 1.0k
0
votes
0
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878
views
Questions on the package "RmiR"
miRNA hgug4112a RmiR miRNA hgug4112a RmiR
14.3 years ago jason0701 ▴ 190
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0
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848
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Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a probe limma Agi4x44PreProcess hgug4112a probe limma Agi4x44PreProcess
14.4 years ago Pedro Lopez-Romero ▴ 120
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votes
0
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1.4k
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on the meaning and value of $stdev.unscaled in a limma's lmFitted MArrayLM object
GO hgug4112a probe GO hgug4112a probe
14.4 years ago Massimo Pinto ▴ 390
0
votes
0
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829
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
Annotation hgug4112a Annotation hgug4112a
14.5 years ago Massimo Pinto ▴ 390
0
votes
3
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1.8k
views
error while using genefilter's nsFilter: could not find function "hgug4112a.db_dbconn"
hgug4112a hgug4112a
updated 14.5 years ago by ★ 5.5k • written 14.5 years ago by ▴ 390
0
votes
11
replies
1.8k
views
Agi4x44PreProcess 1.4.0 question: use of genes.rpt.agi() and Gene Sets
hgug4112a hgug4112a
updated 14.6 years ago by ★ 1.3k • written 14.6 years ago by ▴ 390
0
votes
2
replies
9.2k
views
an apparently strange case of 'Warning: number of items to replace is not a multiple of replacement length'
GO hgug4112a GO hgug4112a
updated 14.6 years ago by 65k • written 14.6 years ago by ▴ 390
0
votes
0
replies
831
views
build.mappings() from Agi4x44PreProcess is not helping me today
GO GUI hgug4112a limma PROcess Agi4x44PreProcess GO GUI hgug4112a limma PROcess
14.8 years ago Massimo Pinto ▴ 390
0
votes
1
reply
1.2k
views
GOstats: HyperGTest for KEGG
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
updated 15.3 years ago by ★ 7.2k • written 15.3 years ago by ▴ 180
0
votes
0
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1.2k
views
GOstats: hyperGTest for KEGG with org.Sc.sgd.db
Annotation GO Yeast hgu133a hgu133b hgu133plus2 hgu95a hgu95av2 hgug4110b hgug4112a GO
15.3 years ago Paul Evans ▴ 180
0
votes
2
replies
1.7k
views
Agilent G4112F with hgug4112a.db?
GO hgug4112a GO hgug4112a
updated 15.5 years ago by ★ 1.3k • written 15.5 years ago by ▴ 190
0
votes
1
reply
931
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 600
0
votes
1
reply
898
views
Agilent spike-in probes
Annotation Normalization GO hgug4112a limma Annotation Normalization GO hgug4112a limma
updated 16.1 years ago by ★ 6.0k • written 16.1 years ago by 21k
24 results • Page 1 of 1
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Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Comment: error by NATASHA • 0
Please ignore, i didnt copy all the scrip
Comment: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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